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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGGGATGTTAAGATGAATTCCGGTCCAGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAGgtaatttcttccatgttaagagtaaataattgatgattctttgtggacaatgcataacacatatttttgctggagccaaactgatccatgtgttacttggaactgcag

Basic information

species Zea mays
transcript GRMZM2G164185_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 5'ss of exon 10
CTTTGGGATGTTAAGATGAATTCCGGTCCAGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAGgtaatttcttccatgttaagagtaaataattgatgattctttgtggacaatgcataacacatatttttgctggagccaaactgatccatgtgttactt---ggaactgcag
||||||||| |||| ||||| || ||||||||||||||||||||||||||||||||| ||||||| |||||||||   | |||||||||| | ||||||  ||  ||||||| |||  ||| | || | |   |||  ||||||  |  ||||| ||||| || |||   | ||||||||
CTTTGGGATATTAACATGAACTCTGGTCCAGTTGCAACATTCCAGGTTCATGAGTATTTAAGGCCCAAGgtaattctgtacatgttaaga-tgaataatccatacttctttgaggatcatgaacaataaactatttcactggagtaactctgattcatgtattgcttcctgaaactgcag

upper sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 10
CTTTGGGATGTTAAGATGAATTCCGGTCCAGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAGgtaatttcttccatgttaagagtaaataattgatgattctttgtggacaatgcataacacatatttttgctggagccaaactgatccatgtgttacttggaactgcag
 | |||||  | || ||| |||| |||||||||||||||||||||||||| |||||| ||||||| ||||| |  | | |||||||     || |||| | ||||      |     ||| | |    | |  |   |    ||   |||||   ||| | ||  | |  |      
TTATGGGACATCAATATGGATTCTGGTCCAGTTGCAACATTCCAGGTTCACGAGTATTTAAGGCCAAAGgttagat-tcccatgtt-----tatataagtaatga------gcaatgaattcctgctgctttatcaagtcatagt--aactggctcatttttttttggccag-----

upper sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA13G42800.1 (Glycine max), 5'ss of exon 10
CTTTGGGATGTTAAGATGAATTCCGGTCCAGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAGgtaatttcttccatgttaagagtaaataattgatgattctttgtggacaatgcataacacatatttttgctggagccaaactgatc-catgtgttacttggaactgcag-
 | |||||  |||| ||| |||| || || |||||||| |||||||||||||||||| |||| || ||||| |  | | |  ||||     || |||| ||||||    || || |   | |||     |    ||||  |      ||||| |   || |  |  ||| |  |||   
TTGTGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCCAGGTTCATGAGTATTTAAGACCCAAGgttagat-tcctgtgtt-----tagataagtgatga---attatgaat--ttcat--tctactgctttgtcgagttataactggttatattttatgtttgaacatgccag

upper sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA08G20830.4 (Glycine max), 5'ss of exon 10
CTTTGGGATGTTAAGATGAATTCCGGTCCAGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAGgtaatttcttccatgtt---aagagtaaataattgatgattctttgtggacaatgcataacaca-tatttttgctggagccaaactgatccatgtgttacttggaactgcag
 | |||||  | || ||| |||| |||||||||||||| |||||||||||||||||| ||||||| ||||| |  | | |||||||   | ||| ||  ||||  || | |||| |  |       ||||    | |||||  |   ||||                              
TTATGGGACATCAATATGGATTCTGGTCCAGTTGCAACGTTCCAGGTTCATGAGTATTTAAGGCCAAAGgttagat-tcccatgtttggatgagcaatgaatttctgctgctttatcaagttatagtaactggctcttttttttttggccag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91057148|gb|EB167566.1|EB167566
EST:     ATTCCGGTCCAGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAG                         TTATGTGATTTATATGAAAATGACTCAATTTTTGACAAATTTGAGTGTTGT
genomic: ATTCCGGTCCAGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAGgtaatttctt ... ggaactgcagTTATGTGATTTATATGAAAATGACTCAATTTTTGACAAATTTGAGTGTTGT
EST: gi|67032341|gb|CO461090.1|CO461090
EST:     ATTCCGGTCCAGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAG                         TTATGTGATTTATATGAAAATGACTCAATTTTTGACAAATTTGAGTGTTGT
genomic: ATTCCGGTCCAGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAGgtaatttctt ... ggaactgcagTTATGTGATTTATATGAAAATGACTCAATTTTTGACAAATTTGAGTGTTGT
EST: gi|71425474|gb|DR806698.1|DR806698
EST:     GGTTCATGAGTATCTAAGGCCTAAG                         TTATGTGATTTATATGAAAATGACTCAATTTTTGACAAATTTGAGTGTTGT
genomic: GGTTCATGAGTATCTAAGGCCTAAGgtaatttctt ... ggaactgcagTTATGTGATTTATATGAAAATGACTCAATTTTTGACAAATTTGAGTGTTGT