1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTCAATGACTGAGATAGCAGAGAATAGTGATGGCACTGGCAGGAAAATGGCACACAACAGAAGTGTTTCTGAGCCAGACTTCGGTAGAACATCAAAACAGgtacttgcaaggagattagtttctgtgtttgttgatgtcgaatttcaaaacaggtacttgcaaaggtatttatcccgctgtttaattttaaaaacctaacag
species | Zea mays |
transcript | GRMZM2G163277_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CACACAACAGAAGTGTTTCTGAGCCAGACTTCGGTAGAACATCAAAACAG GGTGGTGGATCAGATGGCACACAGAGCAGTGCAGCAGGATCTGGCAGTTCTEST: gi|71438020|gb|DR819070.1|DR819070
genomic: CACACAACAGAAGTGTTTCTGAGCCAGACTTCGGTAGAACATCAAAACAGgtacttgcaa ... aacctaacagGGTGGTGGATCAGATGGCACACAGAGCAGTGCAGCAGGATCTGGCAGTTCT
EST: CACACAACAGAAGTGTTTCTGAGCCAGACTTCGGTAGAACATCAAAACAG GGTGGTGGATCAGATGGCACACAGAGCAGTGCAGCAGGATCTGGCAGTEST: gi|71768444|gb|DR966381.1|DR966381
genomic: CACACAACAGAAGTGTTTCTGAGCCAGACTTCGGTAGAACATCAAAACAGgtacttgcaa ... aacctaacagGGTGGTGGATCAGATGGCACACAGAGCAGTGCAGCAGGATCTGGCAGT
EST: CACACAACAGAAGTGTTTCTGAGCCAGACTTCGGTAGAACATCAAAACAG GGTGGTGGATCAGATGGCACACAGAGCAGTGCAGCAGGATCTGGCAGTTCTEST: gi|211518504|gb|FL164998.1|FL164998
genomic: CACACAACAGAAGTGTTTCTGAGCCAGACTTCGGTAGAACATCAAAACAGgtacttgcaa ... aacctaacagGGTGGTGGATCAGATGGCACACAGAGCAGTGCAGCAGGATCTGGCAGTTCT
EST: CACACAACAGAAGTGTTTCTGAGCCAGACTTCGGTAGAACATCAAAACAG GGTGGTGGATCAGATGGCACACAGAGCAGTGCAGCAGGATCTGGCAGTTCT
genomic: CACACAACAGAAGTGTTTCTGAGCCAGACTTCGGTAGAACATCAAAACAGgtacttgcaa ... aacctaacagGGTGGTGGATCAGATGGCACACAGAGCAGTGCAGCAGGATCTGGCAGTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAATGACTGAGATAGCAGAGAATAGTGATGGCACTGGCAGGAAAATGGCACACAACAGAAGTGTTTCTGAGCCAGACTTCGGTAGAACATCAAAACAGgtacttgcaaggagattagtttctgtgtttgttgatgtcgaatttcaaaacaggtacttgcaaaggtatttatcccgctgtttaattttaaaaacctaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT