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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGGgtatttcgtctccacatcctgttccatttcggtttgatcattcatacatgtcatgatgattgacctttttacttgattatgtag

Basic information

species Zea mays
transcript GRMZM2G162672_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G162672_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os05g28200.2 (Oryza sativa), 5'ss of exon 10
GTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGGgtatttcgtctccacatcctgttccatttcggtttgatcattcatacatgtcatgatgattgacctttttacttgattatgtag----------------------
||||||||||||||| ||||||||||| ||||| || |||||  ||||| ||||| ||||||| |||||||||||||||| || ||     || |  || | ||||  | | |   |  || | | ||||||| ||||||| | || | ||||| | |||                      
GTGGGCTGGCCAGGCATTATTTGGAACCCTTACTCCTGATATTGTTGTCCTGACTTCTTTGTATAGCATAGCTGGGgtatatcttc-----atacgattacttttct-tgtaacagtgtatgcttttcatgatcattgaccgtctttcgtgattttctagctagggattgctattgtaaatg

upper sequence: GRMZM2G162672_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os05g28200.1 (Oryza sativa), 5'ss of exon 10
GTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGGgtatttcgtctccacatcctgttccatttcggtttgatcattcatacatgtcatgatgattgacctttttacttgattatgtag
||||||||||||||| ||||||||||| ||||| || |||||  ||||| ||||| ||||||| |||||||||||||||| || ||     || |  || | ||||  | | |   |  || | | ||||||| ||||||| | || | ||||| | |||
GTGGGCTGGCCAGGCATTATTTGGAACCCTTACTCCTGATATTGTTGTCCTGACTTCTTTGTATAGCATAGCTGGGgtatatcttc-----atacgattacttttct-tgtaacagtgtatgcttttcatgatcattgaccgtctttcgtgattttctag

upper sequence: GRMZM2G162672_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA07G18470.1 (Glycine max), 5'ss of exon 10
GTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGGgtatttcgtctcc------acatcctgttccatttcggtttgatcat---tcatacatgtcatgatgattgacctttttacttgattatgtag---
|||||| || ||||| || ||||||||||||||||||||||| |||||  | ||     | |||||||||||||| |||| |  | | |       ||   ||||  || |   | |||| ||    || | | |  ||| | ||| |   | ||  |  || |  | |   
GTGGGCAGGTCAGGCTTTGTTTGGAACTCTTACACCAGATATAATTGTTCTCACACTCCTATACAGCATAGCTGGAgtatgtaatattctacatggcactttgttggatatgaatatgataatatgccaaataaga-atggttattaatactgttgttgtatcacattgcag

upper sequence: GRMZM2G162672_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA18G43310.1 (Glycine max), 5'ss of exon 10
-GTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGGgtat--------ttcgtctccacatcctgttccatttcggtttgatcattcat-acatgtca-tgatgattgacctttttacttgattatgtag--
 ||||||||| ||||| || ||||||||||||||||||||||| |||||  | ||     | |||||||||||||| ||||        ||| ||   ||||  ||||  || |   | |||| ||   | | ||   | || | ||| |  || ||  |  || |  | |  
GGTGGGCTGGTCAGGCTTTGTTTGGAACTCTTACACCAGATATAATTGTTCTCACACTCCTATACAGCATAGCTGGagtatgtaatatattcttcatgacattttgttggatatgaatatgataatatgtcaaataaaaatggttattaatgttgttgttaaatcacattgca

upper sequence: GRMZM2G162672_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA16G19390.1 (Glycine max), 5'ss of exon 2
GTGGGCTGGCCAGGCGTTATTTGGAACTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGGgtatttcgt---ctccacat-----cctgttccatttcggtttgatcat---tcatacatgtcatgatgattgacctttttacttgattatgtag---
|||||| || ||||| || ||||||||||||||||||||||| |||||  | ||     | |||||||||||||| |||| |  |    || ||||       ||||  || |   |  ||| ||    || | | |  ||| | ||| |  || ||  |  || |  | |   
GTGGGCGGGTCAGGCTTTGTTTGGAACTCTTACACCAGATATAATTGTTCTCACACTCCTATACAGCATAGCTGGAgtatgtaatatattctacatggcactttgttggatatgaatacgataatatgccaaataaga-atggttattaatattgttgttgtatcacattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149038823|gb|EE155536.2|EE155536
EST:     CTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGG                         CTAGGGATTGCTATTGTAAATGATT
genomic: CTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGGgtatttcgtc ... gattatgtagCTAGGGATTGCTATTGTAAATGATT
EST: gi|32940940|gb|CF045759.1|CF045759
EST:     ACAGCATAGCTGGG                         CTAGGGATTGCTATTGTAAATGATTTCAAGAGTATTGAAGGGGATAGGACT
genomic: ACAGCATAGCTGGGgtatttcgtc ... gattatgtagCTAGGGATTGCTATTGTAAATGATTTCAAGAGTATTGAAGGGGATAGGACT
EST: gi|211036106|gb|FL230098.1|FL230098
EST:     CTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGG                         CTAGGGATTGCTATTGTAAATGATTTCAAGAGTATTGAAGGGGATAGGACT
genomic: CTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGGgtatttcgtc ... gattatgtagCTAGGGATTGCTATTGTAAATGATTTCAAGAGTATTGAAGGGGATAGGACT
EST: gi|61119511|gb|DN560472.1|DN560472
EST:     CTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGG                         CTAGGGATTGCTATNGTAAATGATTT
genomic: CTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGGgtatttcgtc ... gattatgtagCTAGGGATTGCTATTGTAAATGATTT
EST: gi|211036107|gb|FL230099.1|FL230099
EST:     CTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGG                         CTAGGGATTGCTATTGTAAATGATTTCAAGAGTATTGAAGGGGATAGGACT
genomic: CTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGGgtatttcgtc ... gattatgtagCTAGGGATTGCTATTGTAAATGATTTCAAGAGTATTGAAGGGGATAGGACT
EST: gi|78120047|gb|DV538431.1|DV538431
EST:     CTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGG                         CTAGGGATTGCTATTGTAAATGATTTCAAGAGTATTGAAGGGGATAGGACT
genomic: CTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGGgtatttcgtc ... gattatgtagCTAGGGATTGCTATTGTAAATGATTTCAAGAGTATTGAAGGGGATAGGACT
EST: gi|71426127|gb|DR807177.1|DR807177
EST:     CTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGG                         CTAGGGATTGCTATTGTAAATGATTTCAAGAGTATTGAAGGGGATAGGACT
genomic: CTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGGgtatttcgtc ... gattatgtagCTAGGGATTGCTATTGTAAATGATTTCAAGAGTATTGAAGGGGATAGGACT
EST: gi|71763867|gb|DR961804.1|DR961804
EST:     AGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGG                         CTAGGGATTGCTATTGTAAATGATTTCAAGAGTATTGAAGGGGATAGGACT
genomic: AGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGGgtatttcgtc ... gattatgtagCTAGGGATTGCTATTGTAAATGATTTCAAGAGTATTGAAGGGGATAGGACT
EST: gi|149080582|gb|EE169625.2|EE169625
EST:     CTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGG                         CTAGGGATTGCTATTGTAAATGATTTTCA-GAGTATTGAAGGGGATAGGAC
genomic: CTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGGgtatttcgtc ... gattatgtagCTAGGGATTGCTATTGTAAATGATTT-CAAGAGTATTGAAGGGGATAGGAC
EST: gi|32940989|gb|CF045808.1|CF045808
EST:     GTACAGCATAGCTGGG                         CTAGGGATTGCTATTGTAAATGATTTCAAGAGTATTGAAGGGGATAGGACT
genomic: GTACAGCATAGCTGGGgtatttcgtc ... gattatgtagCTAGGGATTGCTATTGTAAATGATTTCAAGAGTATTGAAGGGGATAGGACT
EST: gi|148929759|gb|EE285358.2|EE285358
EST:     TTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGG                         CTAGGGATTGCTATTGTAAATGATTTCAAGAGTATTGAAGGGGATAGGACT
genomic: CTCTTACACCAGATATCATTGTCTTGACTACTTTGTACAGCATAGCTGGGgtatttcgtc ... gattatgtagCTAGGGATTGCTATTGTAAATGATTTCAAGAGTATTGAAGGGGATAGGACT