Sequence
atgc intronic sequence ATGC exonic sequenceCTGAGCTCGCCATGTCAGGAACATACACTGCAAAGAGCGACGTGTACAGTTTCGGAGTAGTGATGCTGGAGCTGCTGACAGGCCGCAAGCCACTAGACAGgtaaaaaaacatgtcactgcccgccatttccgacctggtggcccattatttgttgtatagatcaagctcacgcatgtagtagtgtttgtgtgtgtgtgtgtttaccgtaccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G162531_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os06g42800.1 (Oryza sativa), 5'ss of exon 14
CTGAGCTCGCCATGTCAGGAACATACACTGCAAAGAGCGACGTGTACAGTTTCGGAGTAGTGATGCTGGAGCTGCTGACAGGCCGCAAGCCACTAGACAGgtaaaaaaacatgtcact-----gcccgccatttccgacctggtggcccattatttgttgtatagatcaagctcacgcatgtagtagtgtttgtgtgtgtgtgtgtttaccgtaccag
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CAGAGTTTGCCATGTCAGGAATATATACTGTAAAAAGTGACGTGTACAGTTTTGGAGTAGTGATGTTAGAACTATTGACAGCACGTAAACCGTTAGACAGgtacattaccttattatttcagagctagtaagtagtaagaaaatgagtaatgtatttctttattagtaacttcaaggccgtcattcattcttgtgttgcaatgtgcag----------
upper sequence: GRMZM2G162531_T03 (Zea mays), 5'ss of exon 11
lower sequence: PP1S242_37V6.1 (Physcomitrella patens), 5'ss of exon 12
CTGAGCTCGCCATGTCAGGAACATACACTGCAAAGAGCGACGTGTACAGTTTCGGAGTAGTGATGCTGGAGCTGCTGACAGGCCGCAAGCCACTAGACAGgtaaaaaaacatgtca-ctgcccgccatttccgacctggtggcccattatttgttgtatagatcaagctcacgcatgtagtagtgtttgtgtgtgtgtgtgtttaccgtaccag---------------------------
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CAGAATACTCCATGTCAGGAACTTACACAGTGAAGAGCGACGTTTACAGCTTCGGCGTTGTGATGCTGGAGCTTCTGACTGGGCGCCAGCCTTTGGACAGgttcactttaatgttaacctctcactagatcgaacctt-ttatgtttcattcacttggtttaaggaatccatgtac-tacttccatatgtatttcactg-atcttctgaatcattcttcgtgcaatctcgattgcttgcag
upper sequence: GRMZM2G162531_T03 (Zea mays), 5'ss of exon 11
lower sequence: EFJ37538 (Selaginella moellendorffii), 5'ss of exon 13
CTGAGCTCGCCATGTCAGGAACATACACTGCAAAGAGCGACGTGTACAGTTTCGGAGTAGTGATGCTGGAGCTGCTGACAGGCCGCAAGCCACTAGACAGgtaaaaaaacatgtcactgcccgccatttccgacctggtggcccattatttgttgtatagatcaagctcacgcatgtagtagtgtttgtgtgtgtgtgtgtttaccgtaccag
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CTGAGTTTGCAATGTCTGGTGTTTATACCGTTAAAAGCGATGTGTACAGTTTTGGAGTGGTGATGCTGGAGCTACTGACAGGGCGTAAGCCTCTGGACAGgtaaggtttcctagttttcaaggttatat--gttccattagctaaagaggtgttctattcag---------------------------------------------------
upper sequence: GRMZM2G162531_T03 (Zea mays), 5'ss of exon 11
lower sequence: EFJ34030 (Selaginella moellendorffii), 5'ss of exon 4
CTGAGCTCGCCATGTCAGGAACATACACTGCAAAGAGCGACGTGTACAGTTTCGGAGTAGTGATGCTGGAGCTGCTGACAGGCCGCAAGCCACTAGACAGgtaaaaaaacatgtcactgcccgccatttccgacctggtggcccattatttgttgtatagatcaagctcacgcatgtagtagtgtttgtgtgtgtgtgtgtttaccgtaccag
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CGGAGTTTGCAATGTCTGGTGTTTATACCGTTAAAAGCGATGTGTACAGTTTTGGAGTGGTGATGCTGGAGCTACTGACAGGGCGTAAGCCTCTGGACAGgtaaggtttcctagttttcaaggttatat--gttccattagctaaagaggtgttctattcag---------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|148979704|gb|EE026779.2|EE026779EST: TTCGGAGTAGTGATGCTGGAGCTGCTGACAGGCCGCAAGCCACTAGACAG CTCCAGAGAGAGGTCAGAACAGTCTCTCGTGAGATGGGCAGCCCCGCAGCT
genomic: TTCGGAGTAGTGATGCTGGAGCTGCTGACAGGCCGCAAGCCACTAGACAGgtaaaaaaac ... accgtaccagCTCCAGAGAGAGGTCAGAACAGTCTCTCGTGAGATGGGCAGCCCCGCAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGAGCTCGCCATGTCAGGAACATACACTGCAAAGAGCGACGTGTACAGTTTCGGAGTAGTGATGCTGGAGCTGCTGACAGGCCGCAAGCCACTAGACAGgtaaaaaaacatgtcactgcccgccatttccgacctggtggcccattatttgttgtatagatcaagctcacgcatgtagtagtgtttgtgtgtgtgtgtgtttaccgtaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT