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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTCAATGTGACGAGTGCTCAAAATGGCGCCGGTTGCCTCTTAATGTTATTGTTGCATCCAAATGGACATGCACCGACAACTCATGGGACCCAAAATGgtaatgctatattgtgttctctgttgatgtgtgattcgatcaatctttagtcttaaaattctgaaacttccttgtgatgatcttattggtgtggaacaat...

Basic information

species Zea mays
transcript GRMZM2G158162_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158162_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os07g48200.2 (Oryza sativa), 5'ss of exon 10
GGATTCAATGTGACGAGTGCTCAAAATGGCGCCGGTTGCCTCTTAATGTTATTGTTGCATCCAAATGGACATGCACCGACAACTCATGGGACCCAAAATGgtaatgctatat-tgtgttctctgttgatgtgtgattcgatcaatctttagtcttaaa-attctgaaacttccttgtgatgatcttattggtgtggaaca-at------
||||||||||||| || |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||  | |||||| ||   ||| ||||| |||| |||| | | ||      |  |  |       ||   ||| |   |||   |    ||| |  | | |  ||  | | |    | |  | |  |||| ||      
GGATTCAATGTGATGATTGCTCAAAATGGCGCCGGTTACCACTTAATGTTATTGTTGCATCCAAGTGGACATGTGCTGACAACACAATCGACTCAAAAAGgta-tgctgtttgtggaaaaacattctagccacactttcgtcatttgatagaactgttcattgtacatcatgatta-gctaactaaaattatttccaacatatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148956308|gb|EC902110.2|EC902110
EST:     ATTGTTGCATCCAAATGGACATGCACCGACAACTCATGGGACCCAAAATG                         CTGCTCCTGCTCTGCGCCTGAAGAGTTGACCCCAAAAGAGTTGCAAAGTGT
genomic: ATTGTTGCATCCAAATGGACATGCACCGACAACTCATGGGACCCAAAATGgtaatgctat ... actgtttcagCTGCTCCTGCTCTGCGCCTGAAGAGTTGACCCCAAAAGAGTTGCAAAGTGT
EST: gi|60397624|gb|DN230440.1|DN230440
EST:     ATTGTTGCATCCAAATGGACATGCACCGACAACTCATGGGACCCAAAATG                         CTGCTCCTGCTCTGCGCCTGAAGAGTTGACCCCAAAAGAGTTGCAAAGTGT
genomic: ATTGTTGCATCCAAATGGACATGCACCGACAACTCATGGGACCCAAAATGgtaatgctat ... actgtttcagCTGCTCCTGCTCTGCGCCTGAAGAGTTGACCCCAAAAGAGTTGCAAAGTGT
EST: gi|67034443|gb|CO462993.1|CO462993
EST:     AT-GNTGCATCCAAATGGACATGCGCCGACAACTCATGGGACCCAAA-TG                         CTGCTCCTGCTCTGCGCCTG
genomic: ATTGTTGCATCCAAATGGACATGCACCGACAACTCATGGGACCCAAAATGgtaatgctat ... actgtttcagCTGCTCCTGCTCTGCGCCTG