1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCTTAACCTTATTGGAGGTGATACACTATTTGGCCGGTTATGGGGATGCCTGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAGgtattttgctcatgtttggaaccatagaacaatgccaatatatggtccgcttacagtatagtgatattgtccag
species | Zea mays |
transcript | GRMZM2G158097_T02 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAG GCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCTEST: gi|71766886|gb|DR964823.1|DR964823
genomic: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAGgtattttgct ... tattgtccagGCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCT
EST: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAG GCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCTEST: gi|32841492|gb|CD981173.1|CD981173
genomic: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAGgtattttgct ... tattgtccagGCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCT
EST: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAG GCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCTEST: gi|71766748|gb|DR964685.1|DR964685
genomic: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAGgtattttgct ... tattgtccagGCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCT
EST: TTTGAAGCTTGCTATTTTCAG GCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGGGGAGGCAGGTGCTEST: gi|32841296|gb|CD980977.1|CD980977
genomic: TTTGAAGCTTGCTATTATCAGgtattttgct ... tattgtccagGCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCT
EST: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAG GCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCTEST: gi|50325271|gb|CO520397.1|CO520397
genomic: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAGgtattttgct ... tattgtccagGCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCT
EST: CATTTTGAAGCTTGCTATTATCAG GCAATTGAAGCAGCCATAGAGTTAACCCTGAGTAAGGTGGAGGCAGGTGCTEST: gi|89249944|gb|DY621730.1|DY621730
genomic: CATTTTGAAGCTTGCTATTATCAGgtattttgct ... tattgtccagGCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCT
EST: TACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAG GCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCTEST: gi|32841005|gb|CD980686.1|CD980686
genomic: TACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAGgtattttgct ... tattgtccagGCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCT
EST: CATTTTGAAGCTTGCTATTATCAG GCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCTEST: gi|32840850|gb|CD980531.1|CD980531
genomic: CATTTTGAAGCTTGCTATTATCAGgtattttgct ... tattgtccagGCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCT
EST: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAG GCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCTEST: gi|71766749|gb|DR964686.1|DR964686
genomic: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAGgtattttgct ... tattgtccagGCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCT
EST: TTTGAAGCTTGCTATTATCAG GCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCTEST: gi|32841147|gb|CD980828.1|CD980828
genomic: TTTGAAGCTTGCTATTATCAGgtattttgct ... tattgtccagGCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCT
EST: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAG GCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCTEST: gi|32840869|gb|CD980550.1|CD980550
genomic: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAGgtattttgct ... tattgtccagGCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCT
EST: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAG GCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCTEST: gi|32841261|gb|CD980942.1|CD980942
genomic: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAGgtattttgct ... tattgtccagGCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCT
EST: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAG GCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCTEST: gi|13389377|gb|BG462692.1|BG462692
genomic: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAGgtattttgct ... tattgtccagGCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCT
EST: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAG GCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAEST: gi|32841581|gb|CD981262.1|CD981262
genomic: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAGgtattttgct ... tattgtccagGCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGA
EST: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAG GCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCTEST: gi|16379420|gb|BI992935.1|BI992935
genomic: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAGgtattttgct ... tattgtccagGCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCT
EST: TACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAG GCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCTEST: gi|32841639|gb|CD981320.1|CD981320
genomic: TACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAGgtattttgct ... tattgtccagGCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCT
EST: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAG GCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCT
genomic: TGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAGgtattttgct ... tattgtccagGCAATTGAAGCAGCCATAGAGTTAAACCTGAGTAAGGTGGAGGCAGGTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTAACCTTATTGGAGGTGATACACTATTTGGCCGGTTATGGGGATGCCTGCCAGATGCTTACTTTCCCAATTTGCATTTTGAAGCTTGCTATTATCAGgtattttgctcatgtttggaaccatagaacaatgccaatatatggtccgcttacagtatagtgatattgtccag
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC