1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GATACTGTGCACAGCAGTGCAAGAGATAAAGTACCCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGGgtgagtacatctgttgcattggtctgtttttttgttgatttgtaaatctggtgacgaaaatgttcacgttatttgggactttttgagtattaaccctgctattcttcattctgatag
species | Zea mays |
transcript | GRMZM2G156800_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAAGTACCCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGG TGAAACAAGCAGTGCTCGGTCGTCAGAGTCATTGGCTTATCGGTTGATGACEST: gi|33094498|gb|CF054492.1|CF054492
genomic: AAAGTACCCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGGgtgagtacat ... attctgatagTGAAACAAGCAGTGCTCGGTCGTCAGAGTCATTGGCTTATCGGTTGATGAC
EST: AAAGTAACCTGGAAAAGTGATTCATATATGAGAGGCAAACATGCAAATGG TGAAACAAACAGCGCTCGGTCGTCAGAGTCATTGGCTTATCGGTTGATGACEST: gi|71323591|gb|DR798464.1|DR798464
genomic: AAAGTACCCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGGgtgagtacat ... attctgatagTGAAACAAGCAGTGCTCGGTCGTCAGAGTCATTGGCTTATCGGTTGATGAC
EST: AAAGTACCCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGG TGAAACAAGCAGTGCTCGGTCGTCAGAGTCATTGGCTTATCGGTTGATGACEST: gi|60359314|gb|DN226287.1|DN226287
genomic: AAAGTACCCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGGgtgagtacat ... attctgatagTGAAACAAGCAGTGCTCGGTCGTCAGAGTCATTGGCTTATCGGTTGATGAC
EST: AAAGTACCCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGG TGAAACAAGCAGTGCTCGGTCGTCAGAGTCATTGGCTTATCGGTTGATGACEST: gi|33095640|gb|CF055634.1|CF055634
genomic: AAAGTACCCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGGgtgagtacat ... attctgatagTGAAACAAGCAGTGCTCGGTCGTCAGAGTCATTGGCTTATCGGTTGATGAC
EST: AAAGTAACCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGG TGAAACAAACAGCGCTCGGTCGTCAGAGTCATTGGCTTATCGGTTGGTGACEST: gi|71427641|gb|DR808691.1|DR808691
genomic: AAAGTACCCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGGgtgagtacat ... attctgatagTGAAACAAGCAGTGCTCGGTCGTCAGAGTCATTGGCTTATCGGTTGATGAC
EST: AAAGTACCCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGG TGAAACAAGCAGTGCTCGGTCGTCAGAGTCATTGGCTTATCGGTTGATGACEST: gi|148955653|gb|EC901325.2|EC901325
genomic: AAAGTACCCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGGgtgagtacat ... attctgatagTGAAACAAGCAGTGCTCGGTCGTCAGAGTCATTGGCTTATCGGTTGATGAC
EST: AAAGTACCCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGG TGAAACAAGCAGTGCTCGGTCGTCAGAGTCATTGGCTTATCGGTTGATGACEST: gi|60345120|gb|DN212093.1|DN212093
genomic: AAAGTACCCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGGgtgagtacat ... attctgatagTGAAACAAGCAGTGCTCGGTCGTCAGAGTCATTGGCTTATCGGTTGATGAC
EST: AAAGTACCCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGG TGAAACAAGCAGTGCTCGGTCGTCAGAGTCATTGGCTTATCGGTTGATGAEST: gi|50338067|gb|CO533193.1|CO533193
genomic: AAAGTACCCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGGgtgagtacat ... attctgatagTGAAACAAGCAGTGCTCGGTCGTCAGAGTCATTGGCTTATCGGTTGATGA
EST: AAAGTACCCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGG TGAAACAAGCAGTGCTCGGTCGTCAGAGTCATTGGCTTATCGGTTGATGACEST: gi|78023372|gb|DV491759.1|DV491759
genomic: AAAGTACCCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGGgtgagtacat ... attctgatagTGAAACAAGCAGTGCTCGGTCGTCAGAGTCATTGGCTTATCGGTTGATGAC
EST: GTGATTCATATATGAGAGGGAAACATGCAAATGG TGAAACAAGCAGTGCTCGGTCGTCAGAGTCATTGGCTTATCGGTTGATGAC
genomic: GTGATTCATATATGAGAGGGAAACATGCAAATGGgtgagtacat ... attctgatagTGAAACAAGCAGTGCTCGGTCGTCAGAGTCATTGGCTTATCGGTTGATGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATACTGTGCACAGCAGTGCAAGAGATAAAGTACCCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGGgtgagtacatctgttgcattggtctgtttttttgttgatttgtaaatctggtgacgaaaatgttcacgttatttgggactttttgagtattaaccctgctattcttcattctgatag
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