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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTCGAGGAGTTTAAAATACCAATAACTTCATGGGAAGCACTCAATCTTCTTCATCTTCAAGTCCGAGATAAGGATCCCATTTTTGATGACGCTCTTGGgttggtctccattatccctttctatgttttcatcgtaatagtgggtaccataccgttcctttatgcctaaatgcctaattgcattttgtacttacaaaggtcacaaatgtgttgtacacattggaaaactcataccattctgattaactatcacaaacatagaagtgaaacatatctttcttgtcatgtttgtag

Basic information

species Zea mays
transcript GRMZM2G156238_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G156238_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os02g20970.1 (Oryza sativa), 5'ss of exon 11
GGCTCGAGGAGTTTAAAATACCAATAACTTCATGGGAAGCACTCAATCTTCTTCATCTTCAAGTCCGAGATAAGGATCCCATTTTTGATGACGCTCTTGGgttggtctccattatccctttc-tatgttttcatcgtaatagtgggtaccataccgttcctttatgcctaaatgcctaattgcattttgtactt---acaaaggtcacaaatgtgttgtacacattggaaaactcataccattctgattaactatcacaaacatagaagtgaaacatatctttcttgtcatgtttgtag
|| | |||||||| ||||||||| |||| ||||||| ||| |||||||||||   ||||||||| ||||||||||||||||| ||||| ||| | || |||||||||||  | || || | | |      |  |  |||  ||     ||| |    | |||  |       | |  ||||  ||||| || ||   ||||||||  ||||  |    |  |      | ||  |  | ||||  || | ||| || ||   |                                    
GGATGGAGGAGTTCAAAATACCAGTAACCTCATGGGCAGCTCTCAATCTTCTCTCTCTTCAAGTTCGAGATAAGGATCCCATCTTTGACGACACACTCGGgttggtctctttaataccgtccatggaacctgcttttaacggt-----cca-attagtacttagtagt---gttctgaattatattttatagttcatacaaaggttgcaaacct-ccatgtagtcccaataaggctaaacatt--gactcact-tctcatgtag-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|61118909|gb|DN559870.1|DN559870
EST:     CTTCATCTTCAAGTCCGAGATAAGGATCCCATTTTTGATGACGCTCTTGG                         CGATTGTTCCATAAGCATCAACAAATTAAGAGGTGGAATAAGGCATGATAT
genomic: CTTCATCTTCAAGTCCGAGATAAGGATCCCATTTTTGATGACGCTCTTGGgttggtctcc ... atgtttgtagCGATTGTTCCATAAGCATCAACAAGTTAAGAGGTGGAATAAGGCATGATAT