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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGGCGTGTTGCATATTCATGGGAATGTTAACGACTCTGATGAGACACGCTGGTTGGACAGTGTTGTTGAATCCATCAGTAATGTCGCCAAAAATCATGgtaaaaatggcgcatttaagctttgatcagctgcgatgcatttatttttgctctccaagagttcatatccgttctcatgtcattttgtgctgcag

Basic information

species Zea mays
transcript GRMZM2G154574_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G154574_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os07g33100.1 (Oryza sativa), 5'ss of exon 10
GGGGGCGTGTTGCATATTCATGGGAATGTTAACGACTCTGATGAGACACGCTGGTTGGACAGTGTTGTTGAATCCATCAGTAATGTCGCCAAAAATCATGgtaaaaatggcgcatttaagctttgatcagctgcgatgcatttatttttgctct--ccaagagttcata-tccgttctcatgtcattttgtgctgcag
|| ||| || |||| || ||||||||||| |||||||| |||||| | | ||||||||||| ||||||| | ||||||| |||  | |||||||  |||||||  | | || | ||||  |    |  || ||||| |||||       | |      |  |  | ||  | |  |  | | ||||||| ||   |||
GGTGGCATGCTGCACATACATGGGAATGTCAACGACTCGGATGAGTCGCTCTGGTTGGACAATGTTGTTAAGTCCATCACTAACATTGCCAAAACACATGgtacgatttgcccttttatacacacaagagttgcgaagcattcgacacggttaaaattaccatcttatgctaccgttgcttttcatttt-tgtctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87155467|gb|DY400256.1|DY400256
EST:     CTGGTTGGACAGTGTTGTTGAATCCATCAGTAATATCGCCAAAAATCATG                         GACTATCTTGGAACGTGTCAGTGGAGCATGTTGAACGTGTCAAATGGTACG
genomic: CTGGTTGGACAGTGTTGTTGAATCCATCAGTAATGTCGCCAAAAATCATGgtaaaaatgg ... tgtgctgcagGACTATCTTGGAACGTGTCAGTGGAGCATGTTGAACGTGTCAAATGGTACG
EST: gi|166635771|gb|EG174518.1|EG174518
EST:     CTGGTTGGACAGTGTTGTTGAATCCATCAGTAATATCGCCAAAAATCATG                         GACTATCTTGGAACGTGTCAGTGGAGCATGTTGAACGTGTC
genomic: CTGGTTGGACAGTGTTGTTGAATCCATCAGTAATGTCGCCAAAAATCATGgtaaaaatgg ... tgtgctgcagGACTATCTTGGAACGTGTCAGTGGAGCATGTTGAACGTGTC
EST: gi|26559427|gb|CA831662.1|CA831662
EST:     CTGGTTGGACAGTGTTGTTGAATCCATCAGTAATATCGCCAAAAATCATG                         GACTATCTTGGAACGTGTCAGTGGAGCATGTTGAACGTGTCAAATGGTACG
genomic: CTGGTTGGACAGTGTTGTTGAATCCATCAGTAATGTCGCCAAAAATCATGgtaaaaatgg ... tgtgctgcagGACTATCTTGGAACGTGTCAGTGGAGCATGTTGAACGTGTCAAATGGTACG
EST: gi|26559057|gb|CA831292.1|CA831292
EST:     CTGGTTGGACAGTGTTGTTGAATCCATCAGTAATATCGCCAAAAATCATG                         GACTATCTTGGAACGTGTCAGTGGAGCATGTTGAACGTGTCAAATGGTACG
genomic: CTGGTTGGACAGTGTTGTTGAATCCATCAGTAATGTCGCCAAAAATCATGgtaaaaatgg ... tgtgctgcagGACTATCTTGGAACGTGTCAGTGGAGCATGTTGAACGTGTCAAATGGTACG
EST: gi|22542262|gb|BU092700.1|BU092700
EST:     CTGGTTGGACAGTGTTGTTGAATCCATCAGTAATATCGCCAAAAATCATG                         GACTATCTTGGAACGTGTCAGTGGAGCATGTTGAACGTGTCAAATGGTACG
genomic: CTGGTTGGACAGTGTTGTTGAATCCATCAGTAATGTCGCCAAAAATCATGgtaaaaatgg ... tgtgctgcagGACTATCTTGGAACGTGTCAGTGGAGCATGTTGAACGTGTCAAATGGTACG
EST: gi|211200877|gb|FL460195.1|FL460195
EST:     CTGGTTGGACAGTGTTGTTGAATCCATCAGTAATGTCGCCAAAAATCATG                         GACTATCTTGGAACGTGTCAGTGGAGCATGTTGAACGTGTCAAATGGTACG
genomic: CTGGTTGGACAGTGTTGTTGAATCCATCAGTAATGTCGCCAAAAATCATGgtaaaaatgg ... tgtgctgcagGACTATCTTGGAACGTGTCAGTGGAGCATGTTGAACGTGTCAAATGGTACG
EST: gi|32942516|gb|CF047335.1|CF047335
EST:     CTGGTTGGACAGTGTTGTTGAATCCATCAGTAATATCGCCAAAAATCATG                         GACTATCTTGGAACGTGTCAGTGGAGCATGTTGAACGTGTCAAATGGT
genomic: CTGGTTGGACAGTGTTGTTGAATCCATCAGTAATGTCGCCAAAAATCATGgtaaaaatgg ... tgtgctgcagGACTATCTTGGAACGTGTCAGTGGAGCATGTTGAACGTGTCAAATGGT
EST: gi|87155759|gb|DY400548.1|DY400548
EST:     CTGGTTGGACAGTGTTGTTGAATCCATCAGTAATATCGCCAAAAATCATG                         GACTATCTTGGAACGTGTCAGTGGAGCATGTTGAACGTGTCAAATGGTACG
genomic: CTGGTTGGACAGTGTTGTTGAATCCATCAGTAATGTCGCCAAAAATCATGgtaaaaatgg ... tgtgctgcagGACTATCTTGGAACGTGTCAGTGGAGCATGTTGAACGTGTCAAATGGTACG
EST: gi|22935761|gb|BU572036.1|BU572036
EST:     CTGGTTGGACAGTGTTGTTGAATCCATCAGTAATATCGCCAAAAATCATG                         GACTATCTTGGAACGTGTCAGTGGAGCATGTTGAACGTGTCAAATGGTACG
genomic: CTGGTTGGACAGTGTTGTTGAATCCATCAGTAATGTCGCCAAAAATCATGgtaaaaatgg ... tgtgctgcagGACTATCTTGGAACGTGTCAGTGGAGCATGTTGAACGTGTCAAATGGTACG