1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAACTTAATTGAAGCAATGCCAACTTCACCGATTTTTGTTGGGAACAAGGCAAAGCGGCTACTGGAAAGAGCTGTTTGGAACGATACATCTTTCCTAGCTgtaagtttgcatcaatttatccttctcatcaaagcttataggaaatgcagtggcttccagagctatcttcaacttcttcttttgttcaacaatcttcagc...
species | Zea mays |
transcript | GRMZM2G153722_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAAAGCGGCTACTGGAAAGAGCTGTTTGGAACGATACATCTTTCCTAGCT GGAATCGATGTGATGGACTATTCCTTGCTTGTGGGAGTCGACGAGGAGAAAEST: gi|166590491|gb|EG201272.1|EG201272
genomic: CAAAGCGGCTACTGGAAAGAGCTGTTTGGAACGATACATCTTTCCTAGCTgtaagtttgc ... tgtttttcagGGAATCGATGTGATGGACTATTCCTTGCTTGTGGGAGTCGACGAGGAGAAA
EST: CAAAGCGGCTACTGGAAAGAGCTGTTTGGAACGATACATCTTTCCTAGCT GGAATCGATGTGATGGACTATTCCTTGCTTNTGGGAEST: gi|26456235|gb|CA827818.1|CA827818
genomic: CAAAGCGGCTACTGGAAAGAGCTGTTTGGAACGATACATCTTTCCTAGCTgtaagtttgc ... tgtttttcagGGAATCGATGTGATGGACTATTCCTTGCTTGTGGGA
EST: CAAAGCGGCTACTGGAAAGAGCTGTTTGGAACGATACATCTTTCCTAGCT GGAATCGATGTGATGGACTATTCCTTGCTTGTGGGAGTCGACGAGGAGAAAEST: gi|211056608|gb|FL029990.1|FL029990
genomic: CAAAGCGGCTACTGGAAAGAGCTGTTTGGAACGATACATCTTTCCTAGCTgtaagtttgc ... tgtttttcagGGAATCGATGTGATGGACTATTCCTTGCTTGTGGGAGTCGACGAGGAGAAA
EST: CAAAGCGGCTACTGGAAAGAGCTGTTTGGAACGATACATCTTTCCTAGCT GGAATCGATGTGATGGACTATTCCTTGCTTGTGGGAGTCGACGAGGAGAAAEST: gi|211056609|gb|FL029991.1|FL029991
genomic: CAAAGCGGCTACTGGAAAGAGCTGTTTGGAACGATACATCTTTCCTAGCTgtaagtttgc ... tgtttttcagGGAATCGATGTGATGGACTATTCCTTGCTTGTGGGAGTCGACGAGGAGAAA
EST: CAAAGCGGCTACTGGAAAGAGCTGTTTGGAACGATACATCTTTCCTAGCT GGAATCGATGTGATGGACTATTCCTTGCTTGTGGGAGTCGACGAGGAGAAAEST: gi|20208322|gb|BQ134411.1|BQ134411
genomic: CAAAGCGGCTACTGGAAAGAGCTGTTTGGAACGATACATCTTTCCTAGCTgtaagtttgc ... tgtttttcagGGAATCGATGTGATGGACTATTCCTTGCTTGTGGGAGTCGACGAGGAGAAA
EST: GGCTACTGGAAAGAGCTGTTTGGAACGATACATCTTTCCTAGCT GGAATCGATGTGATGGACTATTCCTTGCTTGTGGGAGTCGACGAGGAGAAAEST: gi|6601646|gb|AW256042.1|AW256042
genomic: GGCTACTGGAAAGAGCTGTTTGGAACGATACATCTTTCCTAGCTgtaagtttgc ... tgtttttcagGGAATCGATGTGATGGACTATTCCTTGCTTGTGGGAGTCGACGAGGAGAAA
EST: CAAAGCGGCTACTGGAAAGAGCTGTTTGGAACGATAC-TCTTTCCTAGCT GGAATCGATGTGATGGACTATTCCTTGCTTGTGGGAGTCGACGAGGAGAAAEST: gi|241994780|gb|GR421133.1|GR421133
genomic: CAAAGCGGCTACTGGAAAGAGCTGTTTGGAACGATACATCTTTCCTAGCTgtaagtttgc ... tgtttttcagGGAATCGATGTGATGGACTATTCCTTGCTTGTGGGAGTCGACGAGGAGAAA
EST: CAAAGCGGCTACTGGAAAGAGCTGTTTGGAACGATACATCTTTCCTAGCT GGAATCGATGTGATGGACTATTCCTTGCTTGTGGGAGTCGACGAGGAGAAAEST: gi|84980314|gb|DW530663.1|DW530663
genomic: CAAAGCGGCTACTGGAAAGAGCTGTTTGGAACGATACATCTTTCCTAGCTgtaagtttgc ... tgtttttcagGGAATCGATGTGATGGACTATTCCTTGCTTGTGGGAGTCGACGAGGAGAAA
EST: CAAAGCGGCTACTGGAAAGAGCTGTTTGGAACGATACATCTNTCCTAGCT GGAATCGATGTGATGGACTATTCCTTGCTTGTGGGAGTCGACGAGGAGAAA
genomic: CAAAGCGGCTACTGGAAAGAGCTGTTTGGAACGATACATCTTTCCTAGCTgtaagtttgc ... tgtttttcagGGAATCGATGTGATGGACTATTCCTTGCTTGTGGGAGTCGACGAGGAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACTTAATTGAAGCAATGCCAACTTCACCGATTTTTGTTGGGAACAAGGCAAAGCGGCTACTGGAAAGAGCTGTTTGGAACGATACATCTTTCCTAGCTgtaagtttgcatcaatttatccttctcatcaaagcttataggaaatgcagtggcttccagagctatcttcaacttcttcttttgttcaacaatcttcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataggaaa