1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTACTATGGTTGCATCTTCTCTAATGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgcccttgtgttcaacaaatcatgtgtttattttctctctcaatcagcaaatgggggattcttctttacatattctcttttttctcgcttgaag
species | Zea mays |
transcript | GRMZM2G153704_T05 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|60400456|gb|DN233263.1|DN233263
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|148981334|gb|EE027588.2|EE027588
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|101389575|gb|EB816720.1|EB816720
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|61119088|gb|DN560049.1|DN560049
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|67035008|gb|CO463541.1|CO463541
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTNCA-TGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCEST: gi|60339583|gb|DN206556.1|DN206556
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTT-CAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGC
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|211050165|gb|FL124866.1|FL124866
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|211050168|gb|FL124869.1|FL124869
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: AACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|67037358|gb|CO464198.1|CO464198
genomic: AACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|149071544|gb|EE159937.2|EE159937
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTTTCCTTCACCTGGAAAGCTCTGGCAEST: gi|60355926|gb|DN222899.1|DN222899
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|116826239|gb|EC870015.1|EC870015
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|67011667|gb|CO440416.1|CO440416
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|7844519|gb|AW787741.1|AW787741
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|211050172|gb|FL124873.1|FL124873
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|211050170|gb|FL124871.1|FL124871
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|60351782|gb|DN218755.1|DN218755
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|33092425|gb|CF052419.1|CF052419
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|60401429|gb|DN234236.1|DN234236
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|78179345|gb|DV549718.1|DV549718
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|211106867|gb|FL216747.1|FL216747
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|94472602|gb|EB701560.1|EB701560
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|60353755|gb|DN220728.1|DN220728
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: AAACAAGGAAGGAAAAGCCTTTTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTTTGGCAEST: gi|60358931|gb|DN225904.1|DN225904
genomic: AAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|7844129|gb|AW787332.1|AW787332
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCEST: gi|78075827|gb|DV504261.1|DV504261
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGC
EST: GGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|60355312|gb|DN222285.1|DN222285
genomic: GGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|18963572|gb|BM660510.1|BM660510
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|148996906|gb|EE035710.2|EE035710
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCAEST: gi|22545719|gb|BU098078.1|BU098078
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
EST: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATG GGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
genomic: TGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgccct ... tcgcttgaagGGTGCTTCAATGCTACTCCTAGCATTGTCCTTCACCTGGAAAGCTCTGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTATGGTTGCATCTTCTCTAATGGACAAACAAGGAAGGAAAAGCCTTCTGATAACAAGCTTTTCTGGAATGgtaatgcccttgtgttcaacaaatcatgtgtttattttctctctcaatcagcaaatgggggattcttctttacatattctcttttttctcgcttgaag
- - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT