1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagtagagtttgtcagaatattctgaagatccaaatagcactatgcttttggtatactttttttttaaaaaaatactttgtttgagaattgtggt...
species | Zea mays |
transcript | GRMZM2G152888_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAG GTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGGEST: gi|32834771|gb|CD974449.1|CD974449
genomic: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagta ... tatcttccagGTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGG
EST: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAG GTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGGEST: gi|22545658|gb|BU098017.1|BU098017
genomic: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagta ... tatcttccagGTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGG
EST: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAG-GCCTTAGACAAAAG GTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGGEST: gi|213170493|gb|FM189407.1|FM189407
genomic: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagta ... tatcttccagGTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGG
EST: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAG GTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGGEST: gi|32846670|gb|CD986351.1|CD986351
genomic: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagta ... tatcttccagGTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGG
EST: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAG GTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGGEST: gi|71306654|gb|DR789487.1|DR789487
genomic: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagta ... tatcttccagGTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGG
EST: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAG GTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGGEST: gi|78083289|gb|DV511682.1|DV511682
genomic: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagta ... tatcttccagGTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGG
EST: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAG GTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGGEST: gi|87157213|gb|DY402002.1|DY402002
genomic: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagta ... tatcttccagGTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGG
EST: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAG GTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGGEST: gi|78078704|gb|DV507116.1|DV507116
genomic: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagta ... tatcttccagGTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGG
EST: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAG GTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGGEST: gi|60341232|gb|DN208205.1|DN208205
genomic: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagta ... tatcttccagGTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGG
EST: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAG GTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGGEST: gi|32835583|gb|CD975261.1|CD975261
genomic: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagta ... tatcttccagGTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGG
EST: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAG GTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGGEST: gi|76011503|gb|DT938673.1|DT938673
genomic: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagta ... tatcttccagGTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGG
EST: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAG GTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGTTAGGEST: gi|161594466|gb|EY963847.1|EY963847
genomic: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagta ... tatcttccagGTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGG
EST: CGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAG GTTGCTGTTGTTACTGTTGCGTTCCCTGCGACACCTCTTCTTCTTGCTAGGEST: gi|86471728|gb|DY238098.1|DY238098
genomic: CGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagta ... tatcttccagGTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGG
EST: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAG GTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGG
genomic: ACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagta ... tatcttccagGTTGCTGTTGTTACTGTTGCGTTTCCTGCGACACCTCTTCTTCTTGCTAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCGGCTAAGATTCCTGCATTCTCTAGGGAGTGCCTTAGACAAAAGgttagtagtagagtttgtcagaatattctgaagatccaaatagcactatgcttttggtatactttttttttaaaaaaatactttgtttgagaattgtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaat