1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCCTTCGAACATCAATAGTGGTTTTCACTAGGACGGGATTTATGGCTATACTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTTACAGATGAgtaagttttctgttccttctgtgctagtgtgtgctacaagacaaattttatacaatcgcttctatattccatgatcctgattcatcaataaaatgtctcc...
species | Zea mays |
transcript | GRMZM2G152686_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATCTGGCACTATTTTTGCCTTCACAGACGA GGAGAGAGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCAEST: gi|78023476|gb|DV491863.1|DV491863
genomic: ATCTGGCACTATTTTTGCCTTTACAGATGAgtaagttttc ... aatattatagGGAGAGGGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCA
EST: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTCACAGACGA GGAGAGAGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCAEST: gi|60346042|gb|DN213015.1|DN213015
genomic: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTTACAGATGAgtaagttttc ... aatattatagGGAGAGGGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCA
EST: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTTACAGATGA GGAGAGGGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCAEST: gi|5499208|gb|AI855075.1|AI855075
genomic: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTTACAGATGAgtaagttttc ... aatattatagGGAGAGGGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCA
EST: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTCACAGACGA GGAGAGAGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCAEST: gi|5686894|gb|AI939808.1|AI939808
genomic: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTTACAGATGAgtaagttttc ... aatattatagGGAGAGGGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCA
EST: TTTTGCCTTCACAGACGA GGAGAGAGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCAEST: gi|211222802|gb|FL455247.1|FL455247
genomic: TTTTGCCTTTACAGATGAgtaagttttc ... aatattatagGGAGAGGGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCA
EST: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTTACAGATGA GGAGAGGGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCAEST: gi|60359110|gb|DN226083.1|DN226083
genomic: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTTACAGATGAgtaagttttc ... aatattatagGGAGAGGGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCA
EST: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTTACAGATGA GGAGAGGGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCAEST: gi|211222803|gb|FL455248.1|FL455248
genomic: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTTACAGATGAgtaagttttc ... aatattatagGGAGAGGGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCA
EST: TATTTTTGCCTTTACAGATGA GGAGAGGGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCAEST: gi|213173762|gb|FM184221.1|FM184221
genomic: TATTTTTGCCTTTACAGATGAgtaagttttc ... aatattatagGGAGAGGGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCA
EST: CTCCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTCACAGATGA GGAGAGAGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCAEST: gi|148934385|gb|EC878415.2|EC878415
genomic: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTTACAGATGAgtaagttttc ... aatattatagGGAGAGGGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCA
EST: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTTACAGATGA GGAGAGGGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCAEST: gi|6020916|gb|AW065844.1|AW065844
genomic: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTTACAGATGAgtaagttttc ... aatattatagGGAGAGGGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCA
EST: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTCACAGACGA GGAGAGAGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCAEST: gi|78125189|gb|DV543573.1|DV543573
genomic: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTTACAGATGAgtaagttttc ... aatattatagGGAGAGGGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCA
EST: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTTACAGATGA GGAGAGGGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCAEST: gi|21843365|gb|BQ703946.1|BQ703946
genomic: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTTACAGATGAgtaagttttc ... aatattatagGGAGAGGGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCA
EST: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTCACAGACGA GGAGAGAGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCAEST: gi|14204276|gb|BG837953.1|BG837953
genomic: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTTACAGATGAgtaagttttc ... aatattatagGGAGAGGGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCA
EST: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTTACAGATGA GGAGAGGGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCAEST: gi|211384112|gb|FL133262.1|FL133262
genomic: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTTACAGATGAgtaagttttc ... aatattatagGGAGAGGGTTAGGCAACGATTGGCTTTGTACCAAGGTGTATGTCCGGTTCA
EST: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTCACAAACGA GGAGAGAGTTAG
genomic: CTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTTACAGATGAgtaagttttc ... aatattatagGGAGAGGGTTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTTCGAACATCAATAGTGGTTTTCACTAGGACGGGATTTATGGCTATACTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTTACAGATGAgtaagttttctgttccttctgtgctagtgtgtgctacaagacaaattttatacaatcgcttctatattccatgatcctgattcatcaataaaatgtctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caataaaa