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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGTGGAACCAATCATCAAATCCGAAAGACAAAATGACTTGGCATCCTATGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAGgtaggcccttgattttcttctgtatatattactcagatcagaatttgtgtttgcatggtagaattagttacctcaaacctatgtgttgagaataagttta...

Basic information

species Zea mays
transcript GRMZM2G152057_T03
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152057_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g50040.1 (Oryza sativa), 5'ss of exon 10
CTCGTGGAACCAATCATCAAATCCGAAAGACAAAATGACTTGGCATCCTATGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAGgtag--gcccttgattttcttctgta--tatattactcagatcagaatttgtgtttgcatggtagaattagttacctcaaacctatgtgttgagaataagttta
 || |||||||| || ||| |||| ||||||||||||||||||||||| |||| ||||||||||||  || | || |||||||| |||||| | || ||||||    |  | |||||| || |||     | ||  |    |   | || |  | || ||| || ||       |   |    | | | |      |  |  | 
ATCATGGAACCAGTCCTCAGATCCTAAAGACAAAATGACTTGGCATCCAATGACATTTGAGTATGAGTCAGCAAGTCCTGAGCAAATCAATTCAATTAAGgtaatatctgtggattttgttttgtcatctttttttttctttttcagttggcttgtgaatgataaaaaag----ctctagtgttctatctcacttgtttgcctc