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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGTGGAACCAATCATCAAATCCGAAAGACAAAATGACTTGGCATCCTATGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAGgtaggcccttgattttcttctgtatatattactcagatcagaatttgtgtttgcatggtagaattagttacctcaaacctatgtgttgagaataagttta...

Basic information

species Zea mays
transcript GRMZM2G152057_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152057_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g50040.1 (Oryza sativa), 5'ss of exon 10
CTCGTGGAACCAATCATCAAATCCGAAAGACAAAATGACTTGGCATCCTATGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAGgtag--gcccttgattttcttctgta--tatattactcagatcagaatttgtgtttgcatggtagaattagttacctcaaacctatgtgttgagaataagttta
 || |||||||| || ||| |||| ||||||||||||||||||||||| |||| ||||||||||||  || | || |||||||| |||||| | || ||||||    |  | |||||| || |||     | ||  |    |   | || |  | || ||| || ||       |   |    | | | |      |  |  | 
ATCATGGAACCAGTCCTCAGATCCTAAAGACAAAATGACTTGGCATCCAATGACATTTGAGTATGAGTCAGCAAGTCCTGAGCAAATCAATTCAATTAAGgtaatatctgtggattttgttttgtcatctttttttttctttttcagttggcttgtgaatgataaaaaag----ctctagtgttctatctcacttgtttgcctc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76015571|gb|DT942741.1|DT942741
EST:     TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAG                         AGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
genomic: TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAGgtaggccctt ... ttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
EST: gi|149096668|gb|EE182435.2|EE182435
EST:     TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAG                         AGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
genomic: TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAGgtaggccctt ... ttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
EST: gi|67024768|gb|CO453517.1|CO453517
EST:     TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAG                         AGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
genomic: TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAGgtaggccctt ... ttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
EST: gi|148964082|gb|EE015236.2|EE015236
EST:     TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAG                         AGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
genomic: TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAGgtaggccctt ... ttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
EST: gi|149101434|gb|EE187553.2|EE187553
EST:     TATGATACATCTAGCCCTGAGCATATCAATGCTATCAAG                         AGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
genomic: TATGATACATCTAGCCCTGAGCATATCAATGCTATCAAGgtaggccctt ... ttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
EST: gi|60347954|gb|DN214927.1|DN214927
EST:     TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAG                         AGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
genomic: TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAGgtaggccctt ... ttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA