Sequence
atgc intronic sequence ATGC exonic sequenceGGATTGGTGGAAACCGGTTACTGGACATGAGAACTCAGCCACAAAAACTGACTAGGAGATGTGAAGTTACTGCAATACTTGTCTTGTATGGCCTCCCCAGgtcaggcaattttgtctctggaggacatggcttcatttacttgcggttctttcttccacattctaatggccagtgcatcatctgtctgacaaccgctattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G151934_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g16090.1 (Oryza sativa), 5'ss of exon 10
GGATTGGTGGAAACCGGTTACTGGACATGAGAACTCAGCCACAAAAACTGACTAGGAGATGTGAAGTTACTGCAATACTTGTCTTGTATGGCCTCCCCAGgtcaggcaattttgtctctggaggacatggcttcatttacttgcggttctttcttccacattctaatggccagtgcatcatctgtctgacaaccgctattgcag
| ||||||| ||| |||||||| || |||| ||| || || ||||| || ||||||||||| ||||| |||||||| ||||| |||| ||||||||||||||||| ||| | || | | ||||| || | | || | | | | | | | |||| | || | |||||||
GAATTGGTGCAAATCGGTTACTAGATATGAAAACCCAACCGCAAAAGCTAACTAGGAGATGCGAAGTCACTGCAATTCTTGTATTGTTTGGCCTCCCCAGgtcagtgcattct-tcacaagtatttccattttcatgtaaatcaaatgctacaattcgtgtatcatttgtgtgaa-gtcataaacattcca--tacaattgcag
upper sequence: GRMZM2G151934_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA14G07060.1 (Glycine max), 5'ss of exon 9
GGATTGGTGGAAACCGGTTACTGGACATGAGAACTCAGCCACAAAAACTGACTAGGAGATGTGAAGTTACTGCAATACTTGTCTTGTATGGCCTCCCCAGgtca------ggcaattttgtctctggaggacatggcttc--atttacttgcggttc-tttcttccacattctaatggccagtgcat-catctgtctgacaaccgctattgcag
| ||||| || | || || | | ||| ||||||| || |||||||||||||| | |||||||||||| ||||| ||||| | ||||| || || |||| | | |||| || || | | | | |||| | || || | | | | |||| | ||| || || | || |
GAATTGGAGGCCATCGACTAATCGGGATGCGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTATATGGTCTTCCTAGgtaactagtggacaatggaaactttgctttttgtccccttcgaattacagctgattgattcccttttgaatataatagtgagttcagatatttttccaat--------------
upper sequence: GRMZM2G151934_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA02G41920.1 (Glycine max), 5'ss of exon 8
GGATTGGTGGAAACCGGTTACTGGACATGAGAACTCAGCCACAAAAACTGACTAGGAGATGTGAAGTTACTGCAATACTTGTCTTGTATGGCCTCCCCAGgtcaggcaattttgtctctggaggacatggcttcatttacttgcggttctttcttccacattctaatggccagtgcatcatctgtctgacaaccgctattgcag----
| ||||| || | || || | | ||||||||||| || |||||||||||||| | ||||||||| || ||||| ||||| | ||||| || || |||| | || | | | |||| || | ||| | ||| ||| | | | | || || | | || | || | | ||||
GAATTGGAGGCCATCGACTAATAGGGATGAGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTCACAGCAATTCTTGTTCTATATGGTCTTCCTAGgt-aaccagtg--gacaatggaa-actttactttttgtaccc----ttcgaattacagctgattgattccctttagaatatagttgtgggttcagatatttttcaaatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211443684|gb|FL398437.1|FL398437EST: ACTAGGAGATGTGAAGTTACTGCAATACTTGTCTTGTATGGCCTCCCCAG GCTACTAACAGGATCCATCCTCGCCCATGAGCTGATGCACGGGTGGTTGCG
genomic: ACTAGGAGATGTGAAGTTACTGCAATACTTGTCTTGTATGGCCTCCCCAGgtcaggcaat ... gctattgcagGCTACTAACAGGATCCATCCTCGCCCATGAGCTGATGCACGGGTGGTTGCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGATTGGTGGAAACCGGTTACTGGACATGAGAACTCAGCCACAAAAACTGACTAGGAGATGTGAAGTTACTGCAATACTTGTCTTGTATGGCCTCCCCAGgtcaggcaattttgtctctggaggacatggcttcatttacttgcggttctttcttccacattctaatggccagtgcatcatctgtctgacaaccgctattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG