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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGGATATGGGATCATGCTTCTGGAGCTTATTACTGGACAGAGGGCATTTGATCTAGCTCGTCTTGCAAATGATGATGATGTTATGCTTCTTGACTGGgtaagtaaattttcttctcaatagtcatagtgccacagtattaccgcactacagatatacatttttctttcataccattttgctgtctatgggctatatt...

Basic information

species Zea mays
transcript GRMZM2G150024_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150024_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA02G08360.1 (Glycine max), 5'ss of exon 8
TTTTGGATATGGGATCATGCTTCTGGAGCTTATTACTGGACAGAGGGCATTTGATCTAGCTCGTCTTGCAAATGATGATGATGTTATGCTTCTTGACTGGgtaagtaaattttcttctcaatagtcata-gtgccacagtattaccgcactacagatatacatttttctttcataccattttgctgtctatgggctatatt-
 ||||| ||||| || |||||||||||||| || |||||||| ||||| |||||  | ||||| |||||||||||||||||||||||| | || || |||||| ||  | | |      ||||  | |  ||       | | |    | |  |  | |||  ||   |||||||| |       ||   ||   |   |  
CTTTGGGTATGGTATAATGCTTCTGGAGCTAATCACTGGACAAAGGGCTTTTGACTTGGCTCGACTTGCAAATGATGATGATGTTATGTTGCTGGATTGGgtatgttgactataaaag-aatatccttgtgtttttttttttaattatatt-tacctttactgttgaatttcatacgacccctaagtaattgttttccttct

upper sequence: GRMZM2G150024_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA20G31320.1 (Glycine max), 5'ss of exon 10
TTTTGGATATGGGATCATGCTTCTGGAGCTTATTACTGGACAGAGGGCATTTGATCTAGCTCGTCTTGCAAATGATGATGATGTTATGCTTCTTGACTGGgtaagtaaattttcttctca-atagtcatagtgccacagtat-ta--ccgcactacagatatacatttttctttcataccattttgctgtctatgggctatatt
|||||| ||||| ||||||||||||||||| || ||||||||||| || ||||| || ||||| || || ||||| |||||||||||||| ||||| |||||| ||  | | |      | ||  |  |  |   |   | | ||     | || ||| || |     | |  ||   | |  ||| || || | |||| |   
TTTTGGTTATGGTATCATGCTTCTGGAGCTGATAACTGGACAGAGAGCTTTTGACCTTGCTCGACTCGCTAATGACGATGATGTTATGCTGCTTGATTGGgtatgtttagtgtaaaagtatatccttgtgtttttattttttataatttaccctgcagttaaattccatgcaatccctcaaaattgttgact-taggctgt---

upper sequence: GRMZM2G150024_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA10G36280.1 (Glycine max), 5'ss of exon 10
TTTTGGATATGGGATCATGCTTCTGGAGCTTATTACTGGACAGAGGGCATTTGATCTAGCTCGTCTTGCAAATGATGATGATGTTATGCTTCTTGACTGGgtaagt-------aaattttcttctcaatagtcatagtgccacagtattaccgcactacagatatacatttt-tctttcata-ccattttgctgtctatgggctatatt
|||||| ||||| ||||||||||||||||| || ||||||||||| || ||||| || ||||| || || ||||| |||||||||||||| ||||| |||||| ||       ||| ||   ||    |  |  || |      |  |||||   |     |  | |||     |  |||||    ||    |  | ||          
TTTTGGTTATGGTATCATGCTTCTGGAGCTGATCACTGGACAGAGAGCTTTTGACCTTGCTCGACTCGCTAATGACGATGATGTTATGCTGCTTGATTGGgtatgttgagtggaaaattatatccttgtgtttttattatttatggtttaccttgcagttaaagtccatccaacccctcataattgttggagtaccaatt---------

upper sequence: GRMZM2G150024_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv07s0031g01410.t01 (Vitis vinifera), 5'ss of exon 10
TTTTGGATATGGGATCATGCTTCTGGAGCTTATTACTGGACAGAGGGCATTTGATCTAGCTCGTCTTGCAAATGATGATGATGTTATGCTTCTTGACTGGgtaagtaaattttcttctcaatagtca-tagtgccacagtattaccgcactacagatatacatttttctttcat-accattttgctgtctatgggctatatt-
|||||| ||||| || |||||| | ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| |||||| | |   ||| | |||| |  |   || |   |   | |||    | ||  |  |    |   | | |  | |   ||   |     |  ||     || 
TTTTGGTTATGGAATTATGCTTTTAGAGCTAATTACTGGACAGAGGGCATTTGATCTTGCTCGACTTGCAAATGATGATGATGTCATGCTGCTTGATTGGgtatgca---tttatcctcagttctttctattattagtattttatttgaatatggtaaggtctccatatatggtcattcttcccccaagcaatggtcgccttt

upper sequence: GRMZM2G150024_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 10
TTTTGGATATGGGATCATGCTTCTGGAGCTTATTACTGGACAGAGGGCATTTGATCTAGCTCGTCTTGCAAATGATGATGATGTTATGCTTCTTGACTGGgtaagtaa-attttcttctcaatagtcatagtgccacagtattaccgcactacagatatacatttttctttcataccattttgctgtctatgggctatatt-
||| || ||||| || |||||||||||||| || ||||| ||||| || |||||||| ||||| ||||| |||||||||||||| ||| | ||||| |||||||| |  | | |||| |        ||| ||  |    |  ||       |   | | |   | | ||| |  | |    | |   |     || | || 
TTTCGGGTATGGAATTATGCTTCTGGAGCTAATCACTGGGCAGAGAGCTTTTGATCTTGCTCGGCTTGCCAATGATGATGATGTCATGTTGCTTGATTGGgtaagcattactgtctttttccaccctatactg--attagaccacttactgccccctttgccagtattttttaagctaacaggataaatgccatctttctta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19272517|gb|BM888773.1|BM888773
EST:     TTGATCTAGCTCGTCTTGCAAATGATGATGATGTTATGCTTCTTGACTGG                         GTGAAAGGACTGCTGAAGGAGAAGAAGGTGGAGATGTTGGTGGACCCAGAC
genomic: TTGATCTAGCTCGTCTTGCAAATGATGATGATGTTATGCTTCTTGACTGGgtaagtaaat ... catcttgcagGTGAAAGGACTGCTGAAGGAGAAGAAGGTGGAGATGTTGGTGGACCCAGAC
EST: gi|148934568|gb|EC878616.2|EC878616
EST:     TGTTATGCTTCTTGACTGG                         GTGAAAGGACTGCTGAAGGAGAAGAAGGTGGAGATGTTGGTGGACCCAGAC
genomic: TGTTATGCTTCTTGACTGGgtaagtaaat ... catcttgcagGTGAAAGGACTGCTGAAGGAGAAGAAGGTGGAGATGTTGGTGGACCCAGAC
EST: gi|60342695|gb|DN209668.1|DN209668
EST:     TTGATCTAGCTCGTCTTGCAAATGATGATGATGTTATGCTTCTTGACTGG                         GTGAAAGGACTGCTGAAGGAGAAGAAGGTGGAGATGTTGGTGGACCCAGAC
genomic: TTGATCTAGCTCGTCTTGCAAATGATGATGATGTTATGCTTCTTGACTGGgtaagtaaat ... catcttgcagGTGAAAGGACTGCTGAAGGAGAAGAAGGTGGAGATGTTGGTGGACCCAGAC