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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttagcctgctgataactttctgtgtgattctactgattatatctacatgtatattcactagaaggcaatcctttttttag

Basic information

species Zea mays
transcript GRMZM2G149994_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149994_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os05g31220.1 (Oryza sativa), 5'ss of exon 6
AACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactg---------ttagcctgctgataactttctg-tgtgattctactgattatatct---acatgtatattc-----actagaaggcaatcct---ttttttag-----
|||||| ||  | ||||| ||||||||||||||||| || ||||||||||| || || ||| ||||||| |||||||||||||||||||||||||||||||           ||||  ||  |||  | |||   ||||| ||| ||  | ||||||   | |||    |||     |||| ||    ||| |    |||||       
AACTGGTCCCAGCGGGAACTCTAGTGGCAATGCCACGGTTGGAGAAAGACTCTTATCAACTCTATTGACGGAAATGGATGGTTTAGAACTGGCTACGgtacctcttacatatttagattgacgatggcattcaaatgtgactctccttgtcatatctcatatatgccctttctttgtactaaaaaagtatcttgcaatttttgatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67023930|gb|CO452679.1|CO452679
EST:     GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACG                         GGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
genomic: GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttag ... ctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
EST: gi|89106043|gb|DY576260.1|DY576260
EST:     GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACG                         GGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
genomic: GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttag ... ctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
EST: gi|4646479|gb|AI621782.1|AI621782
EST:     ACCGAAATGGATGGTTTAGAACTGGCTACG                         GGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
genomic: ACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttag ... ctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
EST: gi|71331592|gb|DR802638.1|DR802638
EST:     GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACG                         GGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT
genomic: GACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGgtactgttag ... ctttttttagGGAATTATCGTATTGGGTGCTACGAATCGCCCAAATGCAATTGATGCTGCT