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GTGGCAAGTGCAACAGCAACATTCGTGATGATGTTCTCCTCCTCCCTCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTGgtaaatccatgttagaaatctctgaagccacgtttgtttcgttgaaattgaattctattctaataatcataatttaaacacaaactaattaagttaatat...
species | Zea mays |
transcript | GRMZM2G149576_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTCTCTGTGGTGGAGTTCTANCTTCCTGCACAGATTCCCCCTGCCTTTTG CTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTTEST: gi|76917338|gb|DV166773.1|DV166773
genomic: CTCTCTGTGGTGGAGTTTTA-CTTCCTGCACAGATTCCCCCTGCCTTTTGgtaaatccat ... ctatctgcagCTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTT
EST: CCTTTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTG CTGGGTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTTEST: gi|71772905|gb|DR970828.1|DR970828
genomic: CCTCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTGgtaaatccat ... ctatctgcagCTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTT
EST: GTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTG CTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTTEST: gi|76013548|gb|DT940718.1|DT940718
genomic: GTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTGgtaaatccat ... ctatctgcagCTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTT
EST: CCTCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTG CTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTTEST: gi|78111898|gb|DV530295.1|DV530295
genomic: CCTCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTGgtaaatccat ... ctatctgcagCTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTT
EST: CCTCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTG CTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTTEST: gi|78088724|gb|DV517117.1|DV517117
genomic: CCTCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTGgtaaatccat ... ctatctgcagCTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTT
EST: CACAGATTCCCCCTGCCTTTTG CTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTTEST: gi|13198414|gb|BG354309.1|BG354309
genomic: CACAGATTCCCCCTGCCTTTTGgtaaatccat ... ctatctgcagCTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTT
EST: CCTCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTG CTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTTEST: gi|13316011|gb|BG410458.1|BG410458
genomic: CCTCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTGgtaaatccat ... ctatctgcagCTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTT
EST: CCTCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTG CTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAG-GTTEST: gi|94472463|gb|EB701421.1|EB701421
genomic: CCTCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTGgtaaatccat ... ctatctgcagCTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTT
EST: TTCCTGCACAGATTCCCCCTGCCTTTTG CTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTTEST: gi|44900512|gb|CK827057.1|CK827057
genomic: TTCCTGCACAGATTCCCCCTGCCTTTTGgtaaatccat ... ctatctgcagCTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTT
EST: AGTTTTATTTCCTGCACAGTTTCCCCCTGCCTTTTG CTGGCTACCTCATCTTCATTTTCCATATTGGCTGGATTCTGGGGCCAGTGTEST: gi|211390817|gb|FL199661.1|FL199661
genomic: AGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTGgtaaatccat ... ctatctgcagCTGGCTACCTCATCTTCA-TTTCCATATTGGCTGGATTCTGGGGCCAGTGT
EST: TCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTG CTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTTEST: gi|33099896|gb|CF059856.1|CF059856
genomic: TCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTGgtaaatccat ... ctatctgcagCTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTT
EST: CCTCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTG CTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTTEST: gi|71429318|gb|DR810368.1|DR810368
genomic: CCTCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTGgtaaatccat ... ctatctgcagCTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTT
EST: CCTCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTG CTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTTEST: gi|33099796|gb|CF059756.1|CF059756
genomic: CCTCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTGgtaaatccat ... ctatctgcagCTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTT
EST: CCTCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTG CTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTTEST: gi|91877727|gb|EB407684.1|EB407684
genomic: CCTCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTGgtaaatccat ... ctatctgcagCTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTT
EST: TGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTG CTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTTEST: gi|116820526|gb|EC863749.1|EC863749
genomic: TGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTGgtaaatccat ... ctatctgcagCTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTT
EST: CCTCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTG CTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTTEST: gi|93282424|gb|EB674688.1|EB674688
genomic: CCTCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTGgtaaatccat ... ctatctgcagCTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTT
EST: AGATTCCCCCTGCCTTTTG CTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTTEST: gi|91052630|gb|EB163048.1|EB163048
genomic: AGATTCCCCCTGCCTTTTGgtaaatccat ... ctatctgcagCTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTT
EST: ACAGATTCCCCCTGCCTTTTG CTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTTEST: gi|71769067|gb|DR967004.1|DR967004
genomic: ACAGATTCCCCCTGCCTTTTGgtaaatccat ... ctatctgcagCTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTT
EST: TCTGGGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTG CTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTTEST: gi|78179154|gb|DV549527.1|DV549527
genomic: TCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTGgtaaatccat ... ctatctgcagCTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTT
EST: CCTCTCTGTGGTGGAGTTCTACTTCCTGCACAGATTCCCCCTGCCTTTTG CTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTT
genomic: CCTCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTGgtaaatccat ... ctatctgcagCTGGCTACCTCATCTTCATTTCCATATTGGCTGGATTCTGGGGCCAGTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGCAAGTGCAACAGCAACATTCGTGATGATGTTCTCCTCCTCCCTCTCTGTGGTGGAGTTTTACTTCCTGCACAGATTCCCCCTGCCTTTTGgtaaatccatgttagaaatctctgaagccacgtttgtttcgttgaaattgaattctattctaataatcataatttaaacacaaactaattaagttaatat
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacacaa