1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTGGGGTTAAATTTGAGCATATCTCTGCGCCACAACCCACTGATGTAGCACAATCTGCTGGCAGTGAAGCTGCAGATGCAATTGCGAGTGTGTCAGACAGgtaagatattttcattatcattttgggacaatcatgtttcttttgtttattgatttgtcattaagaatgtggatgtgtgtcgtgcag
species | Zea mays |
transcript | GRMZM2G149520_T02 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAATCTGCTGGCAGTGAAGCTGCAGATGCAATTGCGAGTGTGTCAGACAG TGTTATTCCTATCTTCAGGCAGCAAGCAGAGCAGTTGCTAAGCTCTTCCAGEST: gi|31353684|gb|CD438041.1|CD438041
genomic: CAATCTGCTGGCAGTGAAGCTGCAGATGCAATTGCGAGTGTGTCAGACAGgtaagatatt ... tgtcgtgcagTGTTATTCCTATCTTCAGGCAGCAAGCAGAGCAGTTGCTAAGCTCTTCCAG
EST: CAATCTGCTGGCAGTGAAGCTGCAGATGCAATTGCGAGTGTGTCAGACAG TGTTATTCCTATCTTCAGGCAGCAAGCAGAGCAGTTGCTAAGCTCTTCCAGEST: gi|24766670|gb|CA401817.1|CA401817
genomic: CAATCTGCTGGCAGTGAAGCTGCAGATGCAATTGCGAGTGTGTCAGACAGgtaagatatt ... tgtcgtgcagTGTTATTCCTATCTTCAGGCAGCAAGCAGAGCAGTTGCTAAGCTCTTCCAG
EST: AGTGAAGCTGCAGATGCAATTGCGAGTGTGTCAGACAG TGTTATTCCTATCTTCAGGCAGCAAGCAGAGCAGTTGTTAAGCTCTTCCAG
genomic: AGTGAAGCTGCAGATGCAATTGCGAGTGTGTCAGACAGgtaagatatt ... tgtcgtgcagTGTTATTCCTATCTTCAGGCAGCAAGCAGAGCAGTTGCTAAGCTCTTCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGGGTTAAATTTGAGCATATCTCTGCGCCACAACCCACTGATGTAGCACAATCTGCTGGCAGTGAAGCTGCAGATGCAATTGCGAGTGTGTCAGACAGgtaagatattttcattatcattttgggacaatcatgtttcttttgtttattgatttgtcattaagaatgtggatgtgtgtcgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG