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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttcattattccatacatatttctgtctatccagaatccactgttgaaatccatattcagcatagcttgctcagctcctatctgctgtttcaac...

Basic information

species Zea mays
transcript GRMZM2G147671_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147671_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g13970.1 (Oryza sativa), 5'ss of exon 10
CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttcattattccatacatatttctgtctatccagaatccactgttgaaatccatattcagcatagcttgctcagctcctatctgctgtttcaac---
|||||||||||||||||||| ||||||||  ||||||| |||||||| | |   | |    ||    ||||| ||||||| |||| ||| |  | | ||  ||  |  ||||   || ||   ||   ||  |   |   ||   |||| | |    |  |||| |  | | |    
CAAGAGAAGAAGGAAGACAAATCAGACAAGCCAGAAGATGAGAAGAAATAAATCAACTCCTTTGTGTCTTCCTTgtaagatttcagtatgctgt-cttacctccat--atccgatatgcatgttttgcatatagtctattcagcccttgatgactatcgttctggttgtacgatatc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89252647|gb|DY624433.1|DY624433
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTTTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|24767864|gb|CA403000.1|CA403000
EST:     GCCAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|9730888|gb|BE509640.1|BE509640
EST:     GACAAAACAGAAGACCAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|32915272|gb|CF020084.1|CF020084
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|60336789|gb|DN203762.1|DN203762
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTTTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|60401369|gb|DN234176.1|DN234176
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|211047090|gb|FL234542.1|FL234542
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|15053742|gb|BI359287.1|BI359287
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|12968898|gb|BG265739.1|BG265739
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|211047091|gb|FL234543.1|FL234543
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|32937218|gb|CF042037.1|CF042037
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|15053743|gb|BI359288.1|BI359288
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|32937848|gb|CF042667.1|CF042667
EST:     GTCAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCCCAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|60359212|gb|DN226185.1|DN226185
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|4388150|gb|AI491322.1|AI491322
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|22542686|gb|BU093124.1|BU093124
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|28984428|gb|BQ539033.2|BQ539033
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAA                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTC
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTC
EST: gi|9733091|gb|BE511843.1|BE511843
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|76910327|gb|DV163809.1|DV163809
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|5846870|gb|AI999953.1|AI999953
EST:     GACAAAACAGAAGACGAGAAGAACTGATG-AGCCATGTTCATGCTTC-AT                         GCTCACAAAGA
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGA
EST: gi|60400076|gb|DN232883.1|DN232883
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|211525286|gb|FK977009.1|FK977009
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|37384426|gb|CF629283.1|CF629283
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|78021348|gb|DV489735.1|DV489735
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|211132437|gb|FL443441.1|FL443441
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGG-TGCGCTTACTCTCTTC
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|33095782|gb|CF055776.1|CF055776
EST:     GACAAAACAGAAGACGAGAAGAGCTGATGTAGCCATGTTCATGCTCCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|60352219|gb|DN219192.1|DN219192
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|5770174|gb|AI973348.1|AI973348
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|211525285|gb|FK977008.1|FK977008
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|37382952|gb|CF628448.1|CF628448
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|60395593|gb|DN228463.1|DN228463
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|5124319|gb|AI746055.1|AI746055
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTTTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|15053278|gb|BI358823.1|BI358823
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|9733092|gb|BE511844.1|BE511844
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCT
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCT
EST: gi|60354976|gb|DN221949.1|DN221949
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|78026924|gb|DV495311.1|DV495311
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|4609687|gb|AI600526.1|AI600526
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
EST: gi|4804535|gb|AI665407.2|AI665407
EST:     GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT                         GCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG
genomic: GACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 247

CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTGGCTATGAAATTTGCTTATCCTCATGTAACAGTGCTTTGTTTATAACTTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 254

CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTGGCTATGAAATTTGCTTATCCTCATGTAACAGTGCTTTGTTTATAACTTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 224

CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTGGCTATGAAATTTGCTTATCCTCATGTAACAGTGCTTTGTTTATAACTTA


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 179

CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttc ... gactttgcagGCTCACAAAGAAATTGAACATTGGTCTGCATTGGCTGCGCTTACTCTCTTGGCTATGAAATTTGCTTATCCTCATGTAACAGTGCTTTGTTTATAACTTA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCATgtaagagttcattattccatacatatttctgtctatccagaatccactgttgaaatccatattcagcatagcttgctcagctcctatctgctgtttcaac

- - - - - - - - - - - - - - - - - - - - - AAGAAC