1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTTGATGCATATGAAGTGAAGAAACAAGAGCTGATGCAAGAGAATGCAGATTTACGGGCACTGTTACGTTCAATGCAGgtaaaagaaatgtggtgttaagttttactcccttcttttgtatcttataatgcatgctcggaagtcagaactggattcatattccttgtaatgtctgcat...
species | Zea mays |
transcript | GRMZM2G147500_T05 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGCTGATGCAAGAGAATGCAGATTTACGGGCACTGTTACGTTCAATGCAG ATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACTEST: gi|211359662|gb|FL110321.1|FL110321
genomic: AGCTGATGCAAGAGAATGCAGATTTACGGGCACTGTTACGTTCAATGCAGgtaaaagaaa ... tttacctcagATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACT
EST: AGCTGATGCAAGAGAATGCAGATTTACGGGCACTGTTACGTTCAATGCAG ATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACTEST: gi|76923168|gb|DV169366.1|DV169366
genomic: AGCTGATGCAAGAGAATGCAGATTTACGGGCACTGTTACGTTCAATGCAGgtaaaagaaa ... tttacctcagATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACT
EST: GCTGATGNCA-GAGAATGCAGATTTACGGGCACTGTTACGTTCAATGCAG ATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACTEST: gi|60347145|gb|DN214118.1|DN214118
genomic: GCTGATG-CAAGAGAATGCAGATTTACGGGCACTGTTACGTTCAATGCAGgtaaaagaaa ... tttacctcagATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACT
EST: AGCTGATGCAAGAGAATGCAGATTTACGGGCACTGTTACGTTCAATGCAG ATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACTEST: gi|24765838|gb|CA400997.1|CA400997
genomic: AGCTGATGCAAGAGAATGCAGATTTACGGGCACTGTTACGTTCAATGCAGgtaaaagaaa ... tttacctcagATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACT
EST: AGCTGATGCAAGAGAATGCAGATTTACGGGCACTGTTACGTTCAATGCAG ATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACTEST: gi|149081286|gb|EE170399.2|EE170399
genomic: AGCTGATGCAAGAGAATGCAGATTTACGGGCACTGTTACGTTCAATGCAGgtaaaagaaa ... tttacctcagATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCTACT
EST: GCTGATGNCA-GAGAATGCAGATTTACGGGCACTGTTACGTTCAATGCAG ATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCT
genomic: GCTGATG-CAAGAGAATGCAGATTTACGGGCACTGTTACGTTCAATGCAGgtaaaagaaa ... tttacctcagATGGACATGCGTGACTTTCTCAATGCCCCGAATGGGTCATCACAATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGATGCATATGAAGTGAAGAAACAAGAGCTGATGCAAGAGAATGCAGATTTACGGGCACTGTTACGTTCAATGCAGgtaaaagaaatgtggtgttaagttttactcccttcttttgtatcttataatgcatgctcggaagtcagaactggattcatattccttgtaatgtctgcat
- - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - GCAGAT