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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCGAAGTTTACCATGGGGATCCAAATGGAGATTTGAGTGAGAGGAAAGCTTATGACAATGGTGTCCGAGAAGGTGCATTTGGTTTGCTATTGAATTCAgtaagaactcacgatcaatatgtattggtagtgttttttagtgtatgtgtatcatcacaacataagtctataactgtgatttcattcttgtag

Basic information

species Zea mays
transcript GRMZM2G145107_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G145107_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os02g58080.1 (Oryza sativa), 5'ss of exon 10
ACGCGAAGTTTACCATGGGGATCCAAATGGAGATTTGAGTGAGAGGAAAGCTTATGACAATGGTGTCCGAGAAGGTGCATTTGGTTTGCTATTGAATTCAgtaagaactcacgatcaatatgt--------attggtagtgttttttagtgtatgtgtatcatcacaacataa--gtctataactgtgatttcattcttgtag
||| || |||||||||||||| ||||||||  | |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||| |||        ||| ||||| | |     ||| |   |    | ||| |  ||   | | || |  |  | | ||| || |  
ACGTGAGGTTTACCATGGGGACCCAAATGGCAACTTGAGTGAAAGGAAAGCTTATGACAACGGTGTCCGAGAAGGTGCATTTGGTTTGCTATTGAATTCAgtaagaacccttgatcaatgtgtttactataatttgtagtatgtcgctatgtttagatgctgttacaccccaatcatttctagcctttctgt-atttttat--

upper sequence: GRMZM2G145107_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA08G40980.1 (Glycine max), 5'ss of exon 10
ACGCGAAGTTTACCATGGGGATCCAAATGGAGATTTGAGTGAGAGGAAAGCTTATGACAATGGTGTCCGAGAAGGTGCATTTGGTTTGCTATTGAATTCAgtaagaactcacgatcaa---tatgtattggtagtgttttttagtgtatgtgtatc--atcacaacat--aagtctataactgtgatttcattcttgtag--------------------------------------------------------------------
  | |||||||| ||||| |||||||| || ||      |||     |   ||||||  | || ||  ||||||||||||||||||||||||||||||| ||||||||||| |||  |   ||| ||||  ||  |    ||     | |  |  |  || |  |  |  || | | | | | |  ||| |||    |                                                                      
GAGAGAAGTTTATCATGGTGATCCAAAAGGGGACACTTCTGAAGTAGATCTTTATGATCAAGGAGTTAGAGAAGGTGCATTTGGTTTGCTATTGAATTCTgtaagaactcaagattgagcatatttatttttaaagaaacttgtcacaagctttactgatgatgatctggaacttttttatttttcttttattaaactgactttctggatttttatcctgcccaattattgatctgagtcatctgacattgcttttatggcttgttag

upper sequence: GRMZM2G145107_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA18G15950.1 (Glycine max), 5'ss of exon 11
ACGCGAAGTTTACCATGGGGATCCAAATGGAGATTTGAGTGAGAGGAAAGCTTATGACAATGGTGTCCGAGAAGGTGCATTTGGTTTGCTATTGAATTCAgtaagaactcacgatcaatatgtattggtagtgttttttagtgtatgtgtatcatca-caacataagtctataactgtgatttcattcttgtag----------------------------------------------------------------------------
  | |||||||| ||||| |||||||| || |       |||     |   ||||||  | || ||  ||||||||||||||||||||||||||||||| |||||||||||  ||  |    ||||  |  | |       | | |    | | | |   |      |||  |||| |  | |  ||||| ||                                                                             
CAGAGAAGTTTATCATGGTGATCCAAAAGGGGGCACTTCTGAAGTAGATCTTTATGATCAAGGAGTTAGAGAAGGTGCATTTGGTTTGCTATTGAATTCTgtaagaactcaaaattga-gcatatttattttctcaagagatttgtcacaagctttagtgatgatgatctggaacttttttatttttcttttattaaattgactttctggatttttatcctgcccaattattgatctgagtcatctgacattgcttttatggcttgatag

upper sequence: GRMZM2G145107_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv01s0026g01960.t01 (Vitis vinifera), 5'ss of exon 10
ACGCGAAGTTTACCATGGGGATCCAAATGGAGATTTGAGTGAGAGGAAAGCTTATGACAATGGTGTCCGAGAAGGTGCATTTGGTTTGCTATTGAATTCAgtaagaactcacgatcaatatgtattggtagtgttttt---tagtgtatgtgtatcatcacaacataagtctataactgtg-atttcattcttgtag---------------------------------------------------------------------------
  | |||||||| ||||||||||| || || |||  |  ||     ||||| |||||   ||||||  |||||||||||||||||||||||||||||||||||||||||||  ||  |     |    |  | |||||   || |||   |   | ||   | |  ||    |||| | || |    ||  |  | |                                                                           
TAGAGAAGTTTATCATGGGGATCCTAAAGGGGATGAGTCTGCAGTTAAAGCATATGATGCTGGTGTTAGAGAAGGTGCATTTGGTTTGCTATTGAATTCAgtaagaactcaaaattgagcatcagcaattctatttttagatactgttcatagttaattgaatctaaaaataataaatttgtaaaatatattaatggcaaggaattcatcaagttctattcattttacattgccaataatagttaattcaaaagtatatttttgttgcatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89756976|gb|DY686775.1|DY686775
EST:     CTTATGACAATGGTGTCCGAGAAGGTGCATTTGGTTTGCTATTGAATTCA                         GTTGTCCT-GGCCGT-GGTTCATTCCTTGTTG-TCCACTATG
genomic: CTTATGACAATGGTGTCCGAGAAGGTGCATTTGGTTTGCTATTGAATTCAgtaagaactc ... attcttgtagGTTGTCCTTGGC-GTTGGTTCATTCCTTGTTGATCCACTATG
EST: gi|28361756|gb|CB240112.1|CB240112
EST:     CTTATGACAATGGTGTCCGAGAAGGTGCATTTGGTTTGCTATTGAATTCA                         GTTGTCCTTGGCGTTGGTTCATTCCTTGTTGATCCACTATGCCGGATGATT
genomic: CTTATGACAATGGTGTCCGAGAAGGTGCATTTGGTTTGCTATTGAATTCAgtaagaactc ... attcttgtagGTTGTCCTTGGCGTTGGTTCATTCCTTGTTGATCCACTATGCCGGATGATT
EST: gi|31359786|gb|CD444143.1|CD444143
EST:     CAATGGTGTCCGAGAAGGTGCATTTGGTTTGCTATTGAATTCA                         GTTGTCCTTGGCGTTGGTTCATTCCTTGTTGATCCACTATGCCGGATGATT
genomic: CAATGGTGTCCGAGAAGGTGCATTTGGTTTGCTATTGAATTCAgtaagaactc ... attcttgtagGTTGTCCTTGGCGTTGGTTCATTCCTTGTTGATCCACTATGCCGGATGATT
EST: gi|28361547|gb|CB239903.1|CB239903
EST:     CTTATGACAATGGTGTCCGAGAAGGTGCATTTGGTTTGCTATTGAATTCA                         GTTGTCCTTGGCGTTGGTTCATTCCTTGTTGATCCACTATGCCGGATGATT
genomic: CTTATGACAATGGTGTCCGAGAAGGTGCATTTGGTTTGCTATTGAATTCAgtaagaactc ... attcttgtagGTTGTCCTTGGCGTTGGTTCATTCCTTGTTGATCCACTATGCCGGATGATT
EST: gi|29544547|gb|CB604927.1|CB604927
EST:     CTTATGACAATGGTGTCCGAGAAGGTGCATTTGGTTTGCTATTGAATTCA                         GTTGTCCTTGGCGTTGGTTCATTCCTTGTTGATCCACTATGCCGGATGATT
genomic: CTTATGACAATGGTGTCCGAGAAGGTGCATTTGGTTTGCTATTGAATTCAgtaagaactc ... attcttgtagGTTGTCCTTGGCGTTGGTTCATTCCTTGTTGATCCACTATGCCGGATGATT