1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTGAGTTGAGCAAGCAGAATCCTCAAATTCTAAGGTTGATTGAGGAGAATCATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGGgtaagcattctcttatttgattaatttactattttcccctttgttttcggttatgtctgcttcttcacctctgtttactgattttataaatatatatctcttttttttcctgcccgtttcctcgaaatatctag
species | Zea mays |
transcript | GRMZM2G143462_T06 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGG GGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCACGCCATTAGTGTEST: gi|78025477|gb|DV493864.1|DV493864
genomic: CATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGGgtaagcattc ... aaatatctagGGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCATGCCATTAGTGT
EST: CATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGG GGATTTCTTAGACCAACTTGAGGAGGATGAAATGCCTCACGCCATTAGTGTEST: gi|71764241|gb|DR962178.1|DR962178
genomic: CATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGGgtaagcattc ... aaatatctagGGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCATGCCATTAGTGT
EST: CATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGG GGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCATGCCATTAGTGTEST: gi|19272554|gb|BM888810.1|BM888810
genomic: CATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGGgtaagcattc ... aaatatctagGGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCATGCCATTAGTGT
EST: ATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGCAGGG GGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCATGCCATEST: gi|22489727|gb|BU049650.1|BU049650
genomic: ATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAG-AGGGgtaagcattc ... aaatatctagGGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCATGCCAT
EST: CATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGG GGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCATGCCATTAGTGTEST: gi|19822693|gb|BQ048717.1|BQ048717
genomic: CATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGGgtaagcattc ... aaatatctagGGATTTCTTAGACCAACCTGAGGAGGATGAAATGCCTCATGCCATTAGTGT
EST: CATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGG GGATTTCTTAGACCAACCTGAGGAGG
genomic: CATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGGgtaagcattc ... aaatatctagGGATTTCTTAGACCAACCTGAGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAGTTGAGCAAGCAGAATCCTCAAATTCTAAGGTTGATTGAGGAGAATCATGATGAGTTTCTTCAGTTACTAAATGAGCCCTTTGAAGGCGGAGAGGGgtaagcattctcttatttgattaatttactattttcccctttgttttcggttatgtctgcttcttcacctctgtttactgattttataaatatatatctcttttttttcctgcccgtttcctcgaaatatctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG