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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGGGATGTTAAGATGAATTCTGGTCCTGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAGgtaatttcttccatgttaagataaataattgatggttctttgtgcacaatgaatagcacatatttttgctggaacaaacctgatccatgtgttactcaaaactgcag

Basic information

species Zea mays
transcript GRMZM2G142334_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 5'ss of exon 10
CTTTGGGATGTTAAGATGAATTCTGGTCCTGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAGgtaatttcttccatgttaagataaataattgatggttctttgtgcacaatgaatagcacatatttttgctggaacaaacctgatccatgtgttactc---aaaactgcag
||||||||| |||| ||||| |||||||| ||||||||||||||||||||||||||| ||||||| |||||||||   | ||||||||||| ||||||  ||  ||||||| | |  ||||| |  | |   |||  |||||  ||  ||||| ||||| || ||     |||||||||
CTTTGGGATATTAACATGAACTCTGGTCCAGTTGCAACATTCCAGGTTCATGAGTATTTAAGGCCCAAGgtaattctgtacatgttaagatgaataatccatacttctttgaggatcatgaacaataaactatttcactggagtaactctgattcatgtattgcttcctgaaactgcag

upper sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 10
CTTTGGGATGTTAAGATGAATTCTGGTCCTGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAGgtaatttcttccatgttaagataaataattgatggttc-tttgtgcacaatgaatagcacatatttttgctggaacaaacctgatccatgtgttactcaaaactgcag
 | |||||  | || ||| |||||||||| |||||||||||||||||||| |||||| ||||||| ||||| |  | | ||||||| | |||| ||||      |   ||  |||    | |  |   |||| |    ||||  ||    |  |      |                
TTATGGGACATCAATATGGATTCTGGTCCAGTTGCAACATTCCAGGTTCACGAGTATTTAAGGCCAAAGgttagat-tcccatgtttatataagtaatgagcaatgaattcctgctgctttatcaagtcatagta--actggctcatttttttttggccag----------------

upper sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA13G42800.1 (Glycine max), 5'ss of exon 10
CTTTGGGATGTTAAGATGAATTCTGGTCCTGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAGgtaatttcttccatgttaagataaataattgatggttctttgtgcacaatgaatagcacatatttttgctggaacaaacctgatccatgtgttactcaaaactgcag
 | |||||  |||| ||| |||| || || |||||||| |||||||||||||||||| |||| || ||||| |  | | |  |||| |||||| | ||  ||  |   ||     | |    |    |   || |  ||||   | |  | ||   ||       ||         
TTGTGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCCAGGTTCATGAGTATTTAAGACCCAAGgttagat-tcctgtgtttagataagtgatgaattatgaatttcattctactgctttgtcgagttataactggt-tatattttatgtttgaacatgccag--------

upper sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA08G20830.4 (Glycine max), 5'ss of exon 10
CTTTGGGATGTTAAGATGAATTCTGGTCCTGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAGgtaatttcttccatgttaagataaataattgatggttctttgtgca-caatgaatagcacatatttttgctggaacaaacctgatccatgtgttactcaaaactgcag
 | |||||  | || ||| |||||||||| |||||||| |||||||||||||||||| ||||||| ||||| |  | | |||||||  ||| |  |||  ||   |  |  |  | |||   |||| |  |   | |  |        || |                         
TTATGGGACATCAATATGGATTCTGGTCCAGTTGCAACGTTCCAGGTTCATGAGTATTTAAGGCCAAAGgttagat-tcccatgtttggatgagcaatgaatttctgctgctttatcaagttatagtaactggctcttttttttttggccag-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67016408|gb|CO445157.1|CO445157
EST:     ATTCTGGTCCTGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAG                         TTATGTGATTTATATGAAAATGACTCAATTTTCGACAAATTTGAGTGTTGT
genomic: ATTCTGGTCCTGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAGgtaatttctt ... aaaactgcagTTATGTGATTTATATGAAAATGACTCAATTTTCGACAAATTTGAGTGTTGT
EST: gi|71417754|gb|DR804198.1|DR804198
EST:     ATTCTGGTCCTGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAG                         TTATGTGATTTATATGAAAATGACTCAATTTTCGACAAATTTGAGTGTTGT
genomic: ATTCTGGTCCTGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAGgtaatttctt ... aaaactgcagTTATGTGATTTATATGAAAATGACTCAATTTTCGACAAATTTGAGTGTTGT
EST: gi|6020391|gb|AW065319.1|AW065319
EST:     ATTCTGGTCCTGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAG                         TTATGNGATTTATATGAAAATGACTCAATTTTCGACAAATTTGAG
genomic: ATTCTGGTCCTGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAGgtaatttctt ... aaaactgcagTTATGTGATTTATATGAAAATGACTCAATTTTCGACAAATTTGAG