1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AACGTTGTACATCGATTCAAGAGCTTAGTTGAATCTTTGGAAATTGGTGTTGTGCTATCTGGGAGGTTGTGGTCCTCAAGCCAAGCAATCTTCCCAAAAGgttcgtcttctcctgacaattggcatgtatctatgcatcttccagctttgttttaattagaagagatcttgttataaggagttaatcttttgcagctttg...
species | Zea mays |
transcript | GRMZM2G140524_T02 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGTGCTATCTGGGAGG-TGTGGTCCTCAAGCCAAGCAATCTTCCCAAAAG GGTTCAGGAGCAGAGTAAAATACTTCAGCATCGTGGATCCAACACAAATGGEST: gi|87156370|gb|DY401159.1|DY401159
genomic: TGTGCTATCTGGGAGGTTGTGGTCCTCAAGCCAAGCAATCTTCCCAAAAGgttcgtcttc ... gtaaacacagGGTTCAGGAGCAGAGTAAAATACTTCAGCATCGTGGATCCAACACAAATGG
EST: TGTGCTATCTGGGAGGTTGTGGTCCTCAAGCCAAGCAATCTTCCCAAAAG GGTTCAGGAGCAGAGTAAAATACTTCAGCATCGTGGATCCAACACAAATGGEST: gi|26560092|gb|CA832327.1|CA832327
genomic: TGTGCTATCTGGGAGGTTGTGGTCCTCAAGCCAAGCAATCTTCCCAAAAGgttcgtcttc ... gtaaacacagGGTTCAGGAGCAGAGTAAAATACTTCAGCATCGTGGATCCAACACAAATGG
EST: GTGCTATCTGGGAGGTTGTGGTCCTCAAGCCAAGCAATCTTCCCAAAAG GGTTCAGGAGCAGAGTAAAATACTTCAGCATCGTGGATCCAACACAAATGG
genomic: GTGCTATCTGGGAGGTTGTGGTCCTCAAGCCAAGCAATCTTCCCAAAAGgttcgtcttc ... gtaaacacagGGTTCAGGAGCAGAGTAAAATACTTCAGCATCGTGGATCCAACACAAATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACGTTGTACATCGATTCAAGAGCTTAGTTGAATCTTTGGAAATTGGTGTTGTGCTATCTGGGAGGTTGTGGTCCTCAAGCCAAGCAATCTTCCCAAAAGgttcgtcttctcctgacaattggcatgtatctatgcatcttccagctttgttttaattagaagagatcttgttataaggagttaatcttttgcagctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA