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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCCCTGTCTATAGCTCACCAGTTTTCACATCTGAACAAGTTTATGAGAAAGTTCTGGACTTACAAGATAAGgttagtaatttggtagtggacccaacaaaaagtctgcatattactcatggcagtaatcatatctatacccttttattgtgcag

Basic information

species Zea mays
transcript GRMZM2G137696_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G137696_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os02g48110.1 (Oryza sativa), 5'ss of exon 13
TACCCCTGTCTATAGCTCACCAGTTTTCACATCTGAACAAGTTTATGAGAAAGTTCTGGACTTACAAGATAAGgttagtaatttggtagtggacccaacaaaaagtctgcatattactcatggcagtaatcatatctata--cccttttattgtgcag
 ||||||||||| ||  |||| | ||||||||||||| |||| || || |||||||||||| |||||||||||||||| || ||  || |          || | | |||| ||   |||  ||  | |  | ||        | | ||  | |||||
CACCCCTGTCTACAGTCCACCTGCTTTCACATCTGAAGAAGTCTACGAAAAAGTTCTGGACCTACAAGATAAGgttaggaagttcatattaagattctagaataatatgcacatgtttcaccgctctcaaaacattggggattcatctttgtctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32914811|gb|CF019623.1|CF019623
EST:     TTTTCACATCTGAACAAGTTTATGAGAAAGTTCTGGACTTACAAGATAAG                         GCCTCAAGTGTCAACAGAATTCCAAAACCAAAACCCAAGGTCGAGAAGAAA
genomic: TTTTCACATCTGAACAAGTTTATGAGAAAGTTCTGGACTTACAAGATAAGgttagtaatt ... tattgtgcagGTCTCAAGTGTCAACAGAATTCCAAAACCAAAACCCAAGGCCGAGAAGAAA