1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TCTTCCCAAGGGTTGGTGGATATTTGGTCTTGATTTATCTCTCCATGGCGATGTTGATGTATACCAATTCAAGTTCTTTGCTGATGTTTGTCAGAATAAGgtgcattttcttcgcttgctcatcttttttttctttaaactcctttcatttccttatttttggtttcacgtgggacaacatgcgttagtaattgcttcta...
species | Zea mays |
transcript | GRMZM2G135839_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATGTTGATGTGTACCAATTCAAGTTCTTTGCTGATGTTTGTCAGAATAAG GTTGGAGAGAATGATTCTGTGATTGTAGTAACACATGAGCCAAACTGGCTTEST: gi|78179061|gb|DV549434.1|DV549434
genomic: ATGTTGATGTATACCAATTCAAGTTCTTTGCTGATGTTTGTCAGAATAAGgtgcattttc ... agctgtgcagGTTGGAGAGAATGATTCTGTGATTGTAGTAACACATGAGCCAAACTGGCTT
EST: ATGTTGATGTGTACCAATTCAAGTTCTTTGCTGATGTTTGTCAGAATAAG GTTGGAGAGAATGATTCTGTGATTGTAGTAACACATGAGCCAAACTGGCTTEST: gi|12047021|gb|BF729160.1|BF729160
genomic: ATGTTGATGTATACCAATTCAAGTTCTTTGCTGATGTTTGTCAGAATAAGgtgcattttc ... agctgtgcagGTTGGAGAGAATGATTCTGTGATTGTAGTAACACATGAGCCAAACTGGCTT
EST: ATGTTGATGTGTACCAATTCAAGTTCTTTGCTGATGTTTGTCAGAATAAG GTTGGAGAGAATGATTCTGTGATTGTAGTAACACATGAGCCAAACTGGCTT
genomic: ATGTTGATGTATACCAATTCAAGTTCTTTGCTGATGTTTGTCAGAATAAGgtgcattttc ... agctgtgcagGTTGGAGAGAATGATTCTGTGATTGTAGTAACACATGAGCCAAACTGGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCCCAAGGGTTGGTGGATATTTGGTCTTGATTTATCTCTCCATGGCGATGTTGATGTATACCAATTCAAGTTCTTTGCTGATGTTTGTCAGAATAAGgtgcattttcttcgcttgctcatcttttttttctttaaactcctttcatttccttatttttggtttcacgtgggacaacatgcgttagtaattgcttcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT