1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTGCAAGGTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAGgtctgctccacttattcatgttgtttaatattatcctttattcatattgtttgcctttttatgagtctctcagcttttattttatatttcag
species | Zea mays |
transcript | GRMZM2G135283_T04 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAG GCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTEST: gi|67042253|gb|CO468508.1|CO468508
genomic: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAGgtctgctcca ... tatatttcagGCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGT
EST: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAG GCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTEST: gi|14204327|gb|BG838004.1|BG838004
genomic: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAGgtctgctcca ... tatatttcagGCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGT
EST: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAG GCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTEST: gi|6194529|gb|AW146633.1|AW146633
genomic: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAGgtctgctcca ... tatatttcagGCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGT
EST: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAG GCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTEST: gi|148928192|gb|EE284698.2|EE284698
genomic: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAGgtctgctcca ... tatatttcagGCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGT
EST: ATTACTGGCTTGGCTGTTGCGCTCAAACAG GCAACTACTCCAGAATACAGAGCTTCCCAAGAGCAAGTTATCAGTAATTGTEST: gi|148973318|gb|EE024403.2|EE024403
genomic: ATTACTGGCTTGGCTGTTGCGCTCAAACAGgtctgctcca ... tatatttcagGCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGT
EST: CCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAG GCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTEST: gi|60397906|gb|DN230722.1|DN230722
genomic: CCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAGgtctgctcca ... tatatttcagGCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGT
EST: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAG GCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTEST: gi|60351519|gb|DN218492.1|DN218492
genomic: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAGgtctgctcca ... tatatttcagGCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGT
EST: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAG GCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTEST: gi|40336482|gb|CK370552.1|CK370552
genomic: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAGgtctgctcca ... tatatttcagGCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGT
EST: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAG GCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTEST: gi|148958251|gb|EC904465.2|EC904465
genomic: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAGgtctgctcca ... tatatttcagGCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGT
EST: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAG GCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTEST: gi|67024112|gb|CO452861.1|CO452861
genomic: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAGgtctgctcca ... tatatttcagGCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGT
EST: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAG GCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTEST: gi|6102053|gb|AW126523.1|AW126523
genomic: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAGgtctgctcca ... tatatttcagGCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGT
EST: TAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAG GCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTEST: gi|60343439|gb|DN210412.1|DN210412
genomic: TAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAGgtctgctcca ... tatatttcagGCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGT
EST: CCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAG GCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTEST: gi|37393418|gb|CF633973.1|CF633973
genomic: CCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAGgtctgctcca ... tatatttcagGCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGT
EST: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAG GCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTEST: gi|67013913|gb|CO442662.1|CO442662
genomic: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAGgtctgctcca ... tatatttcagGCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGT
EST: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAG GCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTEST: gi|60354435|gb|DN221408.1|DN221408
genomic: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAGgtctgctcca ... tatatttcagGCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGT
EST: ACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAG GCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTEST: gi|60349820|gb|DN216793.1|DN216793
genomic: ACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAGgtctgctcca ... tatatttcagGCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGT
EST: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAG GCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGT
genomic: GTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAGgtctgctcca ... tatatttcagGCAACTACTCCAGAATACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTGCAAGGTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAGgtctgctccacttattcatgttgtttaatattatcctttattcatattgtttgcctttttatgagtctctcagcttttattttatatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT