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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAAGTACATAAACGAAGACGTTTCGTTAGGATCTTGGTTCATCGGGCTAGATGTTGAGCATATCGATGACCGGAGGCTTTGCTGTGGCACTCCGCCTGgtgagttttttcatcacttcatgcccctgactgacaaactcaagcttgtttgttcatcattcacgaggccgcgccatttgaattgctcttctgaaacatggctttgggaacctgctgctgaacaatgccaactatttttcatggagcctcatcttatgacgcctttaaccacag

Basic information

species Zea mays
transcript GRMZM2G132866_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132866_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g06840.2 (Oryza sativa), 5'ss of exon 11
CACAAGTACATAAACGAAGACGTTTCGTTAGGATCTTGGTTCATCGGGCTAGATGTTGAGCATATCGATGACCGGAGGCTTTGCTGTGGCACTCCGCCTGgtgagttttttcatcacttcatgcccctgactgacaaactcaagcttgtttgttcatcattcacgaggccgcgccatttgaattgctc---ttctgaaacatggctttgggaacctgctgctgaacaatgccaactatttttcatggagcctcatcttatgacgcctttaaccacag
|||||||| ||||| || || ||||| ||||||  |||||| || ||  ||||||| ||||||||||| |||||||| ||||| ||||| |||||||||||| || |   |    || || |  |    | | |  | || |||||| | |  ||||   |  | |  ||   ||    |||   |        |  |||   |         | ||  |  || ||  |                                               
CACAAGTATATAAATGAGGATGTTTCATTAGGAAGTTGGTTTATTGGATTAGATGTCGAGCATATCGACGACCGGAGACTTTGTTGTGGTACTCCGCCTGgtaagctccct----acctcctatcttgcatttattatctgaagcttctct--tcatacctagcaatacca-accggacgaacaacgtaaacatttgaaccgagtcacattttcgtgtcgtcgatcacag-----------------------------------------------

upper sequence: GRMZM2G132866_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA06G46230.2 (Glycine max), 5'ss of exon 10
CACAAGTACATAAACGAAGACGTTTCGTTAGGATCTTGGTTCATCGGGCTAGATGTTGAGCATATCGATGACCGGAGGCTTTGCTGTGGCACTCCGCCTGgtgagt-tttttcatcacttcatgcccctgactgacaaactcaagcttgtttgttcatcattcacgaggccgcgccatttgaattgctcttctgaaacatggctttgggaacctgctgctgaacaatgccaactatttttcatggagcctcatcttatgacgcctttaaccacag
||||||||    ||||| || || ||  ||||||| ||||| || || || ||||| |||||||| ||||| || || ||||| ||||||||||| |||||| | |  ||||| | | |  ||    |  | ||||  | | ||     |    | ||||| |         |   || ||  | | |  | |  ||| |    ||       |     || | | ||   | |||| ||   |                               
CACAAGTATGCCAACGAGGATGTGTCACTAGGATCCTGGTTTATTGGACTTGATGTGGAGCATATAGATGATCGAAGACTTTGTTGTGGCACTCCTCCTGgtaaatacttttcctgaatatataaatcacagtgactcatttaaatgattgatgtgatcatac---------cattatctgtttggtttgtttacaacttattattaattgt-taacattgcaaattggttattattcttgcag-------------------------------

upper sequence: GRMZM2G132866_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA12G10520.1 (Glycine max), 5'ss of exon 10
CACAAGTACATAAACGAAGACGTTTCGTTAGGATCTTGGTTCATCGGGCTAGATGTTGAGCATATCGATGACCGGAGGCTTTGCTGTGGCACTCCGCCTGgtgagt-tttttcatcacttcatgcccctgactgacaaactcaagcttgtttgttcatcattcacgaggccgcgccatttgaattgctcttctgaaacatggctttgggaacctgctgctgaacaatgccaactatttttcatggagcctcatcttatgacgcctttaaccacag
||||||||    ||||| || || ||  ||||||| ||||| || || || ||||| |||||||| ||||| || || ||||| ||||||||||| |||||| | |  ||||| | | |  ||    |  | |||   |  |     |||||  |  |  || || |         |||  ||||| |    || ||  ||| | |     | ||| |                                                         
CACAAGTATGCCAACGAGGATGTGTCACTAGGATCCTGGTTTATTGGACTTGATGTGGAGCATATAGATGATCGAAGACTTTGTTGTGGCACTCCTCCTGgtaaatacttttcctaaatatataaatcatattga---atccttatctgtttagt--ttgtttacaaat---tattatt--aattgttaaattgcaaattggttat----tcttgcag---------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|1366551|gb|W59813.1|W59813
EST:     AGATGTTGAGCATATCGATGACCGGAGGCTTTGCTGTGGCACTCCGCCTG                         ATTGCGAATGGAAGGCTCAGGCGGGGAACGTCTGCGCCGCGTCGTTCGACT
genomic: AGATGTTGAGCATATCGATGACCGGAGGCTTTGCTGTGGCACTCCGCCTGgtgagttttt ... ttaaccacagATTGCGAATGGAAGGCTCAGGCGGGGAACGTCTGCGCCGCGTCGTTCGACT