Sequence
atgc intronic sequence ATGC exonic sequenceGTTAAACATACTTGCTGAGATTCTTCGATTTGGTGACCGAGAATTCTACAAAGACTGGTGGAATGCAAAGACAATTGATGAGgtgaaatactaccgtgtttgttgcaacctagtataacttcatttttcaactaacaaaaggaatctaggtaagcatagctgatgttgtgtatgttgtttgctgttgttgcttgtgttgctgtgcttggatgggatcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G130749_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os05g10810.1 (Oryza sativa), 5'ss of exon 10
GTTAAACATACTTGCTGAGATTCTTCGATTTGGTGACCGAGAATTCTACAAAGACTGGTGGAATGCAAAGACAATTGATGAGgtgaaatactaccgtgtttgttgcaacctagtata-acttcatttttcaactaacaaaaggaatctaggtaagcatagctgatgttgtgtatgttgtttgctgttgttgcttgtgttgctgtgcttggatgggatcag--
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GTTAAGTATACTTGCTGAGATTCTTCGATTTGGTGACCGTGAATTCTACAAAGATTGGTGGAATGCAAAAACAATTGATGAGgtgaaagacaatagtttt-----caagctatcatttgcttcctttctcaat---ctaaaagaagttaggtaaacagctctaacattctgtgtgatgtttgctcctgctacatgtgcggtcgtacttggatgggatctcag
upper sequence: GRMZM2G130749_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA13G16560.1 (Glycine max), 5'ss of exon 10
GTTAAACATACTTGCTGAGATTCTTCGATTTGGTGACCGAGAATTCTACAAAGACTGGTGGAATGCAAAGACAATTGATGAGgtgaaatact-accgtg----tttgttgca-acctagtataacttcatttttcaactaacaaaaggaatctaggtaagcatagctgatgttgtgtatgttgtttgctgttgttgcttgtgttgctgtgcttggatgggatcag
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GTTAAATATATTGGCAGAGCTTCTTCGATTTGGTGATCGTGAATTCTACCAGGATTGGTGGAATGCCAAAACTGTTGAAGATgtaagttatttgtcctgatattttgtcgtttacttacagtattttcagtcttca--taa-agagaaattgtgactttttgtttttgtttctgtatttgt--gctgttgttgctgcttccatcag-------------------
upper sequence: GRMZM2G130749_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA17G06120.1 (Glycine max), 5'ss of exon 10
GTTAAACATACTTGCTGAGATTCTTCGATTTGGTGACCGAGAATTCTACAAAGACTGGTGGAATGCAAAGACAATTGATGAGgtgaaatactaccgtgtttgttgcaacctagtataacttcatttttcaactaacaaaaggaatctaggtaagcatagctgatgttgtgtatgttgtttgctgttgttgcttgtgttgctgtgcttggatgggatcag
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GTTAAATATCCTGGCAGAGCTTCTTCGATTTGGTGATCGTGAATTCTACAAGGATTGGTGGAATGCCAAAACTGTCGAAGATgcaagttatttgtcctgatattttgttgtttacttacagtattttcagtctttcataaagagaatttgtga--cttattgttttcttgtatttttgctgttgttgctgcttccatcag-------------------
upper sequence: GRMZM2G130749_T02 (Zea mays), 5'ss of exon 10
lower sequence: AT2G19450.1 (Arabidopsis thaliana), 5'ss of exon 10
GTTAAACATACTTGCTGAGATTCTTCGATTTGGTGACCGAGAATTCTACAAAGACTGGTGGAATGCAAAGACAATTGATGAGgtgaaatactaccgtgtttgttgcaacctagtataacttcatttttcaactaacaaaaggaatctaggtaagcatagctgatgttgtgtatgttgtttgctgttgttgcttgtgttgctgtgcttggatgggatcag
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GTTAAACATATTGGCAGAGCTTCTCTGCTTCGGGGATCGTGAATTCTACAAAGATTGGTGGAATGCAAAAAGTGTGGGAGATgtgagctatt-ttactcaaaagaaaacttatgatttttaatgttgtcgttgtttttgggtcatctaactaaccaaattca----tgtattcactgtcttcctttatcag----------------------------
upper sequence: GRMZM2G130749_T02 (Zea mays), 5'ss of exon 10
lower sequence: Vv11s0016g01930.t01 (Vitis vinifera), 5'ss of exon 10
GTTAAACATACTTGCTGAGATTCTTCGATTTGGTGACCGAGAATTCTACAAAGACTGGTGGAATGCAAAGACAATTGATGAGgtgaaatactaccgtgtttgttgcaacctagtataacttcatttttcaactaacaaaaggaatctaggtaagcatagctgatgttgtgtatgttgtttgctgttgttgcttgtgttgctgtgcttggatgggatcag
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GTTAAATATACTTGCTGAGCTTCTTCGTTTTGGGGACCGTGAGTTCTATAAAGATTGGTGGAATGCAAAAACAGTTGAGGAGgtaggttttt----tattttctgtgaagt-gttttccttaagttgt-----gtttcaagccatccatttc----taacttctgct-tgactattatttgtgtttgttgtatgcatttcc-tggttctacgg-atcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88756047|gb|DY540188.1|DY540188EST: GTGACCGAGAATTCTACAAAGACTGGTGGAATGCAAAGACAATTGATGAG TACTGGAGAAAATGGAACATG
genomic: GTGACCGAGAATTCTACAAAGACTGGTGGAATGCAAAGACAATTGATGAGgtgaaatact ... atgggatcagTACTGGAGAAAATGGAACATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTAAACATACTTGCTGAGATTCTTCGATTTGGTGACCGAGAATTCTACAAAGACTGGTGGAATGCAAAGACAATTGATGAGgtgaaatactaccgtgtttgttgcaacctagtataacttcatttttcaactaacaaaaggaatctaggtaagcatagctgatgttgtgtatgttgtttgctgttgttgcttgtgttgctgtgcttggatgggatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG