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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGGGGATCCGTTGGAGAAAGGCACCTTACTGGGACCACTGCACACTCCTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggttaaaagtagtgttacattatcggttcctacaattatttgaacctccattacaatctcactggatataaatagctatgagaatcatgttattc...

Basic information

species Zea mays
transcript GRMZM2G130440_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130440_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os09g26880.4 (Oryza sativa), 5'ss of exon 9
AATTGGGGATCCGTTGGAGAAAGGCACCTTACTGGGACCACTGCACACTCCTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggttaaaagtagtgttacattatcggttcctacaattatttgaacctccattacaatctcactggatataaatagctatgagaatcatgttattc-------
|||||||||||| |||||||| || || |||||||| ||| |||||||||||||||||| |||   ||| ||||||||||| || || |||| |||||||||||    ||  | |  ||  |||  ||  | |  | ||   || |     | ||||| |   | |    || |  | | ||   | | | |   |  |        
AATTGGGGATCCTTTGGAGAATGGTACGTTACTGGGGCCATTGCACACTCCTGCTTCAAGAGACGCCTTCTTGAAAGGCATCCAAACCATCAGATCTCAGgtga----tattattgatgcaacaacatttgcttgtgcatcaatgtctgtttgcattata---ttaaacaatctttacatcttcaatacttaaaatgcttaagttgg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67020548|gb|CO449297.1|CO449297
EST:     ATTCATACTATCAAATCTCAG                         GGNAGGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACT
genomic: ATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGG-A-GGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACT
EST: gi|14204228|gb|BG837905.1|BG837905
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|32922323|gb|CF027135.1|CF027135
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|67026257|gb|CO455006.1|CO455006
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTTTC-AACCTCAG                         GGAGGG-AAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|32922524|gb|CF027336.1|CF027336
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|32828369|gb|CD968047.1|CD968047
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|32923501|gb|CF028313.1|CF028313
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|7145301|gb|AW506782.1|AW506782
EST:     AGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: AGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|32923132|gb|CF027944.1|CF027944
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|60397385|gb|DN230201.1|DN230201
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|60350203|gb|DN217176.1|DN217176
EST:     TTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|32923147|gb|CF027959.1|CF027959
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTACCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|149059482|gb|EE156966.2|EE156966
EST:     TGCTTCAAAAGAGAAC-TTTTGAAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: TGCTTCAAAAGAGAACTTTTTG-AAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|148962666|gb|EE013565.2|EE013565
EST:     CTGCTTCAAAAGAGAATTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATTTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|32923528|gb|CF028340.1|CF028340
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|6536574|gb|AW224887.1|AW224887
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|32833586|gb|CD973264.1|CD973264
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|32844476|gb|CD984157.1|CD984157
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|33099261|gb|CF059221.1|CF059221
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|60354799|gb|DN221772.1|DN221772
EST:     AAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: AAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|88748631|gb|DY532772.1|DY532772
EST:     TTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: TTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|32844203|gb|CD983884.1|CD983884
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|5895823|gb|AW037069.1|AW037069
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|60350447|gb|DN217420.1|DN217420
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|32845522|gb|CD985203.1|CD985203
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|32828428|gb|CD968106.1|CD968106
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|32844902|gb|CD984583.1|CD984583
EST:     CTGCTTCAAAAGAGACCTTTNTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|32923608|gb|CF028420.1|CF028420
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|32922556|gb|CF027368.1|CF027368
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|61236938|gb|DN586642.1|DN586642
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|67034827|gb|CO463360.1|CO463360
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|149021322|gb|EE154443.2|EE154443
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|67026004|gb|CO454753.1|CO454753
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|211364319|gb|FL429344.1|FL429344
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTT-GGAGGATCTGCCATTGAATCAGAAGGAAACTT
EST: gi|8102664|gb|AW927311.1|AW927311
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|213168098|gb|FM193492.1|FM193492
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|149076635|gb|EE165274.2|EE165274
EST:     AAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: AAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|32835746|gb|CD975424.1|CD975424
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|37396775|gb|CF635681.1|CF635681
EST:     TTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|32922276|gb|CF027088.1|CF027088
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|32923568|gb|CF028380.1|CF028380
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|149097408|gb|EE183262.2|EE183262
EST:     TGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: TGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|32923279|gb|CF028091.1|CF028091
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|111193977|gb|EE292113.1|EE292113
EST:     TCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: TCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|33099158|gb|CF059118.1|CF059118
EST:     CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
EST: gi|149008574|gb|EE040752.2|EE040752
EST:     TTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAG                         GGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT
genomic: CTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggtta ... ttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATTGGGGATCCGTTGGAGAAAGGCACCTTACTGGGACCACTGCACACTCCTGCTTCAAAAGAGAACTTTTTGAAAGGCATTCAGACTATCAAATCTCAGgtgaaggttaaaagtagtgttacattatcggttcctacaattatttgaacctccattacaatctcactggatataaatagctatgagaatcatgttattc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagtag