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GTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAGgtctaactccctttaatctattaatgttacaactatatattgcaacttcgccaatttccttgctatggtttgatttgctctctgaaatgtggcagagtgcacgtcttatgtttttgttgttaggttagttctcagaggaactagttccgtgtcttaatgtcag
species | Zea mays |
transcript | GRMZM2G130230_T02 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAG GTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTTGGGCAAEST: gi|211483716|gb|FL115161.1|FL115161
genomic: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAGgtctaactcc ... ttaatgtcagGTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTTGGGCAA
EST: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAG GTTCTGCAATCTGTGAACCCTATTATGCCTGAAGAGGTAGTCCTTGGGCAAEST: gi|67037531|gb|CO464345.1|CO464345
genomic: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAGgtctaactcc ... ttaatgtcagGTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTTGGGCAA
EST: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAG GTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTTGGGCAAEST: gi|6194863|gb|AW146967.1|AW146967
genomic: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAGgtctaactcc ... ttaatgtcagGTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTTGGGCAA
EST: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAG GTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTTGGGCAAEST: gi|211483712|gb|FL115157.1|FL115157
genomic: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAGgtctaactcc ... ttaatgtcagGTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTTGGGCAA
EST: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAG GTTCTGCAATCTGTGAACCCTATTATGCCTGAAGAGGTAGTCCTTGGGCAAEST: gi|211483710|gb|FL115155.1|FL115155
genomic: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAGgtctaactcc ... ttaatgtcagGTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTTGGGCAA
EST: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAG GTTCTGCAATCTGTGAACCCTATTATGCCTGAAGAGGTAGTCCTTGGGCAAEST: gi|605736|gb|T27548.1|T27548
genomic: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAGgtctaactcc ... ttaatgtcagGTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTTGGGCAA
EST: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAG GTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTTEST: gi|211483711|gb|FL115156.1|FL115156
genomic: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAGgtctaactcc ... ttaatgtcagGTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTT
EST: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAG GTTCTGCAATCTGTGAACCCTATTATGCCTGAAGAGGTAGTCCTTGGGCAAEST: gi|211428715|gb|FL387534.1|FL387534
genomic: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAGgtctaactcc ... ttaatgtcagGTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTTGGGCAA
EST: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGAYGAGAAAGTCAAG GTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGYAGTCCTTGGGCAAEST: gi|211483713|gb|FL115158.1|FL115158
genomic: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAGgtctaactcc ... ttaatgtcagGTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTTGGGCAA
EST: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAG GTTCTGCAATCTGTGAACCCTATTATGCCTGAAGAGGTAGTCCTTGGGCAAEST: gi|211483714|gb|FL115159.1|FL115159
genomic: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAGgtctaactcc ... ttaatgtcagGTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTTGGGCAA
EST: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAG GTTCTGCAATCTGTGAACCCTATTATGCCTGAAGAGGTAGTCCTTGGGCAAEST: gi|37424885|gb|CF650176.1|CF650176
genomic: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAGgtctaactcc ... ttaatgtcagGTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTTGGGCAA
EST: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAG GTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTTGGGCAAEST: gi|33103286|gb|CF063246.1|CF063246
genomic: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAGgtctaactcc ... ttaatgtcagGTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTTGGGCAA
EST: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAG GTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTTGGGCAAEST: gi|18660007|gb|BM500637.1|BM500637
genomic: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAGgtctaactcc ... ttaatgtcagGTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTTGGGCAA
EST: GAGAAAGTCAAG GTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTTGGGCAAEST: gi|113701618|gb|EE679122.1|EE679122
genomic: GAGAAAGTCAAGgtctaactcc ... ttaatgtcagGTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTTGGGCAA
EST: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAG GTTTTGCAATCTGTGAACCCTATTATGCCTGAAGAGGTAGTCCTTGGGCAA
genomic: AAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAGgtctaactcc ... ttaatgtcagGTTCTGCAATCTGTGAACCCTATTAAGCCTGAAGAGGTAGTCCTTGGGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCACATCAGAGATGAGAAAGTCAAGgtctaactccctttaatctattaatgttacaactatatattgcaacttcgccaatttccttgctatggtttgatttgctctctgaaatgtggcagagtgcacgtcttatgtttttgttgttaggttagttctcagaggaactagttccgtgtcttaatgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG