Sequence
atgc intronic sequence ATGC exonic sequenceGAGGAGGTTGTCCTAAAAAGATGCTGGCTTGCACGCTATTGGGGCTTAGCAGTTCAATATGgtaagtttcctgataaatcttaatggagaagtcttgaacttttttctgattgtactaactattcactagacatttagaaaggatgggcttgttgtgtata...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G126266_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g70320.1 (Oryza sativa), 5'ss of exon 10
GAGGAGGTTGTCCTAAAAAGATGCTGGCTTGCACGCTATTGGGGCTTAGCAGTTCAATATGgtaagtttcctgataaatcttaatggagaagtcttgaacttttttctgattgtactaactattcactagaca-----tttagaaaggatgggcttgttgtgtata
|| ||||| ||||| ||||| ||||||||| |||| |||||||||||||| |||||||| |||||||| | || | | || ||| | | || ||| |||| | || ||| || || | |||| | || | | ||
GAAGAGGTGGTCCTTAAAAGGTGCTGGCTTTCACGTTATTGGGGCTTAGCGGTTCAATACGgtaagttgctaagagtatttctgtaagaaatgcttttagtgttatct---tgtataagctgttctgtaatcatgctctctagacaaaataaaatcaaagctta--
upper sequence: GRMZM2G126266_T01 (Zea mays), 5'ss of exon 9
lower sequence: AT4G25070.2 (Arabidopsis thaliana), 5'ss of exon 9
GAGGAGGTTGTCCTAAAAAGATGCTGGCTTGCACGCTATTGGGGCTTAGCAGTTCAATATGgtaagtttcctgataaatcttaatgg-agaagtcttgaacttttttctgattgtactaactattcactagacatttagaaaggatgggcttgttgtgtata---
||||| ||||| ||||| |||||||||||||| ||||| |||| ||||| |||||| |||||||| | | || ||| | | || | || | | | || ||| | || | || | || || | | | | |||| | |
GAGGAAGTTGTTCTAAAGAGATGCTGGCTTGCTCGCTACTGGGAATTAGCTGTTCAACATGgtaagagaatttttctctcgtaaagatacaattgttttatcctctgttgg--gtattgacc-tgcaat-gatggatatgatgaagtaacctgttcttctcatgaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86469940|gb|DY236310.1|DY236310EST: CTAAAAAGATGCTGGCTTGCACGCTATTGGGGCTTAGCAGTTNCA-TATG GTGTGTATCCCGAAATT
genomic: CTAAAAAGATGCTGGCTTGCACGCTATTGGGGCTTAGCAGTT-CAATATGgtaagtttcc ... caacttcaagGTGTGTATCCCGAAATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGGAGGTTGTCCTAAAAAGATGCTGGCTTGCACGCTATTGGGGCTTAGCAGTTCAATATGgtaagtttcctgataaatcttaatggagaagtcttgaacttttttctgattgtactaactattcactagacatttagaaaggatgggcttgttgtgtata
- - - - - - - - AAGATG
- - - - - - - - - - ATGCTG