1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTCTTCTCAATCAGAGATGCTGCCGCCAACAACTTGAAGCGCCTTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatctactatgtcaataccttgtatttcctacaactgtgcataatataatccttctatttcctgcaacctgttctgttttcccag
species | Zea mays |
transcript | GRMZM2G122135_T04 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTEST: gi|31356310|gb|CD440667.1|CD440667
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTT
EST: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAN GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|4967137|gb|AI691859.1|AI691859
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: -TGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|17930061|gb|BM267021.1|BM267021
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|16919855|gb|BM074388.1|BM074388
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|40336631|gb|CK370701.1|CK370701
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|116828872|gb|EC861659.1|EC861659
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|32914759|gb|CF019571.1|CF019571
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TTGCGGAAGAGTTCGGTCCAGAGTGG-CAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|60343317|gb|DN210290.1|DN210290
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|29947616|gb|CB816748.1|CB816748
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|78543701|gb|DV621199.1|DV621199
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|60352636|gb|DN219609.1|DN219609
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|18167158|gb|BM336997.1|BM336997
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|37388540|gb|CF631479.1|CF631479
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|211206781|gb|FL154157.1|FL154157
genomic: TCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|16926507|gb|BM079570.1|BM079570
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATTCGCACTATTTGTACCGCATGACGATTCTGEST: gi|78119292|gb|DV537676.1|DV537676
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|6022239|gb|AW067167.1|AW067167
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: GTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|5525452|gb|AI861345.1|AI861345
genomic: GTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|33101424|gb|CF061384.1|CF061384
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|78025113|gb|DV493500.1|DV493500
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|32845037|gb|CD984718.1|CD984718
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTEST: gi|16925569|gb|BM078637.1|BM078637
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGT
EST: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|6031522|gb|AW076424.1|AW076424
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGACAAGATCACCAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|37393714|gb|CF634122.1|CF634122
genomic: TGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|17931830|gb|BM268790.1|BM268790
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTGEST: gi|78022431|gb|DV490818.1|DV490818
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTTCTCAATCAGAGATGCTGCCGCCAACAACTTGAAGCGCCTTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatctactatgtcaataccttgtatttcctacaactgtgcataatataatccttctatttcctgcaacctgttctgttttcccag
- - - - - - - - - - - - - - - - - - - - - - - GGAAGA