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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTCTCAATCAGAGATGCTGCCGCCAACAACTTGAAGCGCCTTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatctactatgtcaataccttgtatttcctacaactgtgcataatataatccttctatttcctgcaacctgttctgttttcccag

Basic information

species Zea mays
transcript GRMZM2G122135_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G122135_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 10
GTCTTCTCAATCAGAGATGCTGCCGCCAACAACTTGAAGCGCCTTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgtt-atttatctactatgtcaataccttgt-atttcctacaactgtgcataatataatccttctatttcctgcaacctgttctgttttcccag--------------------------------------------------------------------------------------------
||    |||||  | || || || || ||||||||||| |||||||| ||||| || || || |||||||| |||||||| ||||||||||||||| || ||| | ||   |  ||   |    |  |   ||| |     ||   |  ||   |   | |  || |   | || ||  |  | ||                                                                                            
GTTCATTCAATTCGCGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAAGAATTTGGACCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctatttgcttaatttattattaacgaaatgacacaccaacatatgtcaacattaattcgtctg-tgtaggtttttgtgcatgtctagtggaaattgaaatatatgcttgttatatgctattacttcttctattctcctaagtgcaacttcagaagtatctatatggaatgctggaacag

upper sequence: GRMZM2G122135_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 10
GTCTTCTCAATCAGAGATGCTGCCGCCAACAACTTGAAGCGCCTTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgtt-atttatctactatgtcaataccttgt-atttcctacaactgtgcataatataatccttctatttcctgcaacctgttctgttttcccag------------------------------------------------------------------------------------
||    |||||  | || || || || ||||||||||| |||||||| ||||| || ||||| |||||||| |||||||| ||||||||||||||| || ||| ||||   |  ||   |    |  |  |||| |     ||   |  ||   |   | |  ||     | || ||  |  |  |                                                                                    
GTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctatttacttaatttattattaacgaaatgatacaccaacatatgtcaacattaattcgtctg-tgtgggtttttgtgcatgtcttgaaatatatgtttgctatatgctattaccttttctattctcccaagtgtaacttcagaagtatctatatggaatgtgtggaacag

upper sequence: GRMZM2G122135_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA02G10790.2 (Glycine max), 5'ss of exon 10
GTCTTCTCAATCAGAGATGCTGCCGCCAACAACTTGAAGCGCCTTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgtt-atttatctactatgtcaataccttgtatttcctaca-actgtgcataatataatccttctatttcctgcaacctgttctgttttcccag--------
||    || ||| | || || || || ||||| ||||||||||| || ||||| || ||||| |||||||| ||||| || |||||||| |||||| || | |   ||     | ||   | |   |  || | ||| ||| || ||| |   |  |  |    | |   |  | | | |||            
GTTCATTCGATCCGTGAGGCAGCTGCTAACAATTTGAAGCGCCTAGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAACACATAATTCCACAGgttcatgtcttggcttaagaattattatttcagtattatacactatgccta-tatgaatgtgtttgtgttggtatgtttctgtatcttctacttgaatttc

upper sequence: GRMZM2G122135_T02 (Zea mays), 5'ss of exon 10
lower sequence: AT1G13320.1 (Arabidopsis thaliana), 5'ss of exon 10
GTCTTCTCAATCAGAGATGCTGCCGCCAACAACTTGAAGCGCCTTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatctactatgtcaataccttgtatttcctacaactgtgcataatataatc-cttctatttcctgcaacctgttctgttttcccag
||   ||||||| | || ||||| || |||||  ||||||| ||||| |||||||| ||||| || |||||||||||||||||| ||||||||||| | | |  |     | |  |  | |||| |  |  |         |  ||  |  ||  |  ||  || |   | || |  ||   |||
GTTCACTCAATCCGTGAAGCTGCTGCAAACAATCTGAAGCGTCTTGCTGAAGAGTTTGGTCCTGAATGGGCAATGCAGCATATAGTTCCTCAGgtt-tgtgtagaaatcttaagcatatagtatgttttcaattcaaatcgagcattttagctattggttattggagtatatt-tacttgttcag

upper sequence: GRMZM2G122135_T02 (Zea mays), 5'ss of exon 10
lower sequence: AT3G25800.1 (Arabidopsis thaliana), 5'ss of exon 9
GTCTTCTCAATCAGAGATGCTGCCGCCAACAACTTGAAGCGCCTTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatctactatgtcaataccttgtatttcctacaactgtgcataatataatccttctatttcctgcaacctgttctgttttcccag
||   ||||||| | |||||||| || |||||  | ||||| ||||| || || || ||||| || ||||||||||| |||||| |||||||||   ||| ||||  || |  | | ||| ||       ||  |||  ||  | | |   ||  |||    || |    ||     | | |||
GTTCACTCAATCCGCGATGCTGCTGCTAACAATCTCAAGCGGCTTGCTGAGGAATTTGGTCCTGAATGGGCAATGCAACATATAGTTCCTCAGg---tttgtctagaatttttacaactt-tagaaaagtcag-tgtctatcttgttagtgtta-attagtcgctattcatt---aatccgcag

upper sequence: GRMZM2G122135_T02 (Zea mays), 5'ss of exon 10
lower sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 9
GTCTTCTCAATCAGAGATGCTGCCGCCAACAACTTGAAGCGCCTTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgtt-atttatctactatgtcaataccttgtattt-----cctacaactgtgcata-atataatccttctatttcctgc--aacctgttctgttttcccag
|| | ||| ||  | |||||||| || |||||||| ||||||||||| ||||| || ||||| || ||||||||||||||  ||||||| ||||||  | ||     | || ||||   |||   ||     | |  ||  |    |  |||| |   |   |||  |  |  |     || || |||  |  
GTTTACTCCATTCGTGATGCTGCTGCTAACAACTTAAAGCGCCTTGCAGAAGAATTTGGTCCTGACTGGGCAATGCAGCACTTAATTCCACAGgtttgtctagtggttgtgacaattaattgctattagtggcttgtaaaggatagtggatatgagtttcaaattctcatcttatttcattttggtttgtctc

upper sequence: GRMZM2G122135_T02 (Zea mays), 5'ss of exon 10
lower sequence: Vv17s0000g03870.t01 (Vitis vinifera), 5'ss of exon 11
GTCTTCTCAATCAGAGATGCTGCCGCCAACAACTTGAAGCGCCTTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatctactatgtcaatac---cttgtatttcctacaactgtgcataatataatccttctatttcc------tgcaacctgttctgttttcccag
|| |  |||||  | ||||| || || || ||  ||||||||||||| || || || || ||||| |||||||||||||| |||||||| |||||  ||    |   || | | |      | |||  |  || |   |     |  |  ||| | || ||         | |||  |||    | |  | ||
GTTTATTCAATTCGTGATGCAGCTGCTAATAATGTGAAGCGCCTTGCAGAGGAATTTGGCCCAGATTGGGCAATGCAGCACATAATTCCACAGgtctttctgattacatattactgtgaattggtaccttttaaacaagcattgataaatatcttgctgttcaacatagatacaaagtgtctaatctgacaag

upper sequence: GRMZM2G122135_T02 (Zea mays), 5'ss of exon 10
lower sequence: PP1S197_114V6.1 (Physcomitrella patens), 5'ss of exon 9
GTCTTCTCAATCAGAGATGCTGCCGCCAACAACTTGAAGCGCCTTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatctactatgtc---aataccttgtatttc--ctacaactgtgcataatataatcct---------tctatttcctgcaacctgttctgttttcccag----------------------------------------------------------------------------------------------
|| | ||| ||| |||| ||||| || |||||| | ||||| ||||| |||||||||||| | ||||||||| |||| || || ||||| ||||| | ||  |    | ||     ||    | ||  ||    |  | | || |   ||| | | |         || ||    | || ||| |  |  ||   ||                                                                                               
GTGTACTCTATCCGAGAGGCTGCTGCGAACAACCTTAAGCGTCTTGCCGAAGAGTTCGGTTCCGAGTGGGCATTGCAACACATCATTCCACAGgt-acttgcccgacaagtttgtgatgaggtctaactcggtaatgagtatggaagttatgagcttctctcacagtcgatacattacagcctttgttcgttaaacacacgagctatggttgagagacctgtgtatttgtgataatttttatactactgataggctgagatttttttctgaccatgttgtgaggacttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33092634|gb|CF052628.1|CF052628
EST:     ATGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTT
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTT
EST: gi|31357128|gb|CD441485.1|CD441485
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|18169928|gb|BM339768.1|BM339768
EST:     GCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: GCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|31356310|gb|CD440667.1|CD440667
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAN                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|16377717|gb|BI992076.1|BI992076
EST:     AAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: AAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|5499176|gb|AI855043.1|AI855043
EST:     GAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: GAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|22549241|gb|BU101442.1|BU101442
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|5018372|gb|AI714565.1|AI714565
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|84977249|gb|DW475671.1|DW475671
EST:     TGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|29545063|gb|CB605241.1|CB605241
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|116828872|gb|EC861659.1|EC861659
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|32914759|gb|CF019571.1|CF019571
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGG-CAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|31362520|gb|CD446877.1|CD446877
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|37393714|gb|CF634122.1|CF634122
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|29947616|gb|CB816748.1|CB816748
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|17931830|gb|BM268790.1|BM268790
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|60352636|gb|DN219609.1|DN219609
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|211206781|gb|FL154157.1|FL154157
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|24763713|gb|CA398884.1|CA398884
EST:     GTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: GTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|60343317|gb|DN210290.1|DN210290
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|20803005|gb|BQ294055.1|BQ294055
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|33101424|gb|CF061384.1|CF061384
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|17930061|gb|BM267021.1|BM267021
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|40336631|gb|CK370701.1|CK370701
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|18169253|gb|BM339093.1|BM339093
EST:     ATGCAGCATATAATTCCTCAG                         GTGC-GGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: ATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|211206778|gb|FL154154.1|FL154154
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|18167158|gb|BM336997.1|BM336997
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|37388540|gb|CF631479.1|CF631479
EST:     TCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|78025113|gb|DV493500.1|DV493500
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|32845037|gb|CD984718.1|CD984718
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGT
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGT
EST: gi|6031522|gb|AW076424.1|AW076424
EST:     TGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGACAAGATCACCAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|78119292|gb|DV537676.1|DV537676
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|6056718|gb|AW091123.1|AW091123
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCCCTATTTGTACCGCATGACGATTTTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|24766051|gb|CA401209.1|CA401209
EST:     TGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|60349044|gb|DN216017.1|DN216017
EST:     TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
EST: gi|18175671|gb|BM350900.1|BM350900
EST:     TGCAGCATATAATTCCTCAG                         GTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG
genomic: TGCAGCATATAATTCCTCAGgttatttatc ... gttttcccagGTGCTGGAGAAGATCAACAATCCGCACTATTTGTACCGCATGACGATTCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCTTCTCAATCAGAGATGCTGCCGCCAACAACTTGAAGCGCCTTGCGGAAGAGTTCGGTCCAGAGTGGGCAATGCAGCATATAATTCCTCAGgttatttatctactatgtcaataccttgtatttcctacaactgtgcataatataatccttctatttcctgcaacctgttctgttttcccag

- - - - - - - - - - - - - - - - - - - - - - -  GGAAGA