1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGTCGATTGAGAGGGAAACTGGATACCAATGGCGTAATTTCTTCTCTTTTGGAGGAGCGATTGACTCCAGGTGTCACTTTCCAGTTGTCTGCAGAGgtcagtttgagaaacttactctactatttattacgccgtctgtttattttttacatggtttactgctatttgagaaagtcagaagtcataaatttacact...
species | Zea mays |
transcript | GRMZM2G120876_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TTTTGGAGGAGCGATTGACTCCAGGTGTCACTTTCCAGTTGTCTGCAGAG CTGGACCACTGGAAGAAAGATTACAAATTTGGGTTTGGTATGGCTCTCGGAEST: gi|84977313|gb|DW475735.1|DW475735
genomic: TTTTGGAGGAGCGATTGACTCCAGGTGTCACTTTCCAGTTGTCTGCAGAGgtcagtttga ... tcttgtgcagCTGGACCACTGGAAGAAAGATTACAAATTTGGGTTTGGTATGGCTCTCGGA
EST: TTTTGGAGGAGCGATTGACTCCAGGTGTCACTTTCCAGTTGTCTGCAGAG CTGGACCACTGGAAGAAAGATTACAAATTTGGGTTTGGTATGGCTCTCGGAEST: gi|149101278|gb|EE187391.2|EE187391
genomic: TTTTGGAGGAGCGATTGACTCCAGGTGTCACTTTCCAGTTGTCTGCAGAGgtcagtttga ... tcttgtgcagCTGGACCACTGGAAGAAAGATTACAAATTTGGGTTTGGTATGGCTCTCGGA
EST: TTTTGGAGGAGCGATTGACTCCAGGTGTCACTTTCCAGTTGTCTGCAGAG CTGGACCACTGGAAGAAAGATTACAAATTTGGGTTTGGTATGGCTCTCGGAEST: gi|116828230|gb|EC855796.1|EC855796
genomic: TTTTGGAGGAGCGATTGACTCCAGGTGTCACTTTCCAGTTGTCTGCAGAGgtcagtttga ... tcttgtgcagCTGGACCACTGGAAGAAAGATTACAAATTTGGGTTTGGTATGGCTCTCGGA
EST: TTTTGGAGGAGCGATTGACTCCAGGTGTCACTTTCCAGTTGTCTGCAGAG CTGGACCACTGGAAGAAAGATTACAAATTTGGGTTTGGTATGGCTCTCGGA
genomic: TTTTGGAGGAGCGATTGACTCCAGGTGTCACTTTCCAGTTGTCTGCAGAGgtcagtttga ... tcttgtgcagCTGGACCACTGGAAGAAAGATTACAAATTTGGGTTTGGTATGGCTCTCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCGATTGAGAGGGAAACTGGATACCAATGGCGTAATTTCTTCTCTTTTGGAGGAGCGATTGACTCCAGGTGTCACTTTCCAGTTGTCTGCAGAGgtcagtttgagaaacttactctactatttattacgccgtctgtttattttttacatggtttactgctatttgagaaagtcagaagtcataaatttacact
- - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG