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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttcttttttttctttttacaaatcgggacaggtgattattagttctcctgcctctgttgtgtttgcacacaagcaaacctcgtactgagagaatctgtgcaccgttttacag

Basic information

species Zea mays
transcript GRMZM2G120578_T02
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148928250|gb|EE284812.2|EE284812
EST:     CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG                         GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: gi|37380776|gb|CF627223.1|CF627223
EST:     CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG                         GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: gi|6448423|gb|AW181189.1|AW181189
EST:     CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG                         GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCAAAAAAGCTAACTGCGGCG
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: gi|32866078|gb|CF005760.1|CF005760
EST:     CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG                         GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: gi|113701473|gb|EE678977.1|EE678977
EST:     CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG                         GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: gi|78117804|gb|DV536191.1|DV536191
EST:     CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG                         GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: gi|4804277|gb|AI666143.1|AI666143
EST:     CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG                         GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: gi|78024870|gb|DV493257.1|DV493257
EST:     CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG                         GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: gi|12968943|gb|BG265784.1|BG265784
EST:     CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG                         GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: gi|110496613|gb|EE015080.1|EE015080
EST:     CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG                         GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGGG
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: gi|211191319|gb|FL465409.1|FL465409
EST:     CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG                         GAGCAGGCGGAGGAAKTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: gi|89247054|gb|DY618840.1|DY618840
EST:     CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG                         GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: gi|37382012|gb|CF627919.1|CF627919
EST:     CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG                         GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: gi|211042510|gb|FL401130.1|FL401130
EST:     CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG                         GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGCATATGGCAGCGTTTGTTCTTCCGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttcttttttttctttttacaaatcgggacaggtgattattagttctcctgcctctgttgtgtttgcacacaagcaaacctcgtactgagagaatctgtgcaccgttttacag

- - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - -  AGAAGC