Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATATCCAGGCCAACACCTTCGCTTTCGGAGTGATTTTACTGGAGATCATCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgatcgtcatcttggacctgaagcagctataaaatgtctgtcgctgaagcttctttgtgcatgcag

Basic information

species Zea mays
transcript GRMZM2G119759_T04
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119759_T04 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os04g58700.1 (Oryza sativa), 5'ss of exon 12
TGATATCCAGGCCAACACCTTCGCTTTCGGAGTGATTTTACTGGAGATCATCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgatcg--tcatcttggacctgaa-gcagctataaaatgtctgtcgctgaagct--tctttgtgcatgcag-----------------------
 || ||||| | ||| || || ||||| ||||||||||| |||||||||||||| || |||||||| || |||||||| |||||||||||| | ||||||||||| |  ||   || |  |  | || |  |   | |  || |   | |    |||  |     |   |  |||                         
AGACATCCAAGGCAATACATTTGCTTTTGGAGTGATTTTGCTGGAGATCATCAGTGGACGGCTTCCTTATTGCAAGGACAAAGGCTATTTGATTGACTGGgtgaggcattctactctttctctatctcattgtgacaaagaagtaaatattttagaaattgactctgaagtctgctcaagaggaccagagcctagttcca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76931734|gb|DV172825.1|DV172825
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|40334564|gb|CK368634.1|CK368634
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|60345284|gb|DN212257.1|DN212257
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|60356012|gb|DN222985.1|DN222985
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|44901335|gb|CK827880.1|CK827880
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|148961326|gb|EE012055.2|EE012055
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|166645174|gb|EG146810.1|EG146810
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTAACCTCC
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTA-CCTCC
EST: gi|149102188|gb|EE188116.2|EE188116
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|18650219|gb|BM499038.1|BM499038
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
EST: gi|45846935|gb|CN070878.1|CN070878
EST:     TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGG                         GCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG
genomic: TCAGCGGGCGGCTTCCATACTGCAAGGATAAAGGCTATTTGGTCGACTGGgtgagccgat ... gtgcatgcagGCGAGCAAGTACCTCCAGCAGGCAGAGGAGATCGGGAAGCTGGTGGACCCG