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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGACATCCTCTCCAACGGTGGCGCAGTCCAAGAAATGGCTCATATTGCAAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAATgcaagtgctcgatcgttcaattcgcgtgcctttcttttcatttgtgtcattttacatgtaacaatcggatcatccattgttttgtgattattgtgtgttatattaccatgtacag

Basic information

species Zea mays
transcript GRMZM2G118063_T03
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G118063_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os08g08820.2 (Oryza sativa), 5'ss of exon 10
TGGGACATCCTCTCCAACGGTGGCGCAGTCCAAGAAATGGCTCATATTGCAAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAATgcaagtgctcgatcgttcaattcgcgtgcctttcttttcatttgtgtcatt--ttacatgtaacaatcggatcatccattgttttgtgattattgtgtgttatattaccatgtacag
|||||||| || |||||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||||||||  ||||| |||||||||||||||| ||||||         ||||| |      || ||  ||||    |  ||   |  ||||||||  |||| |     |||  | | ||  ||  |  |   | || | || | ||  
TGGGACATTCTGTCCAACGGCGGCGCCGTCCAAGAAATGGCTCACATTGCCAACGGCCGTGACCATGGCAACTCTGTCTCGCTTCTTCGTGTCAATgtaagtgc---------caattag------ttactactcatcaaggcaataaatagcatgtaacggtcgg-tagcgaattagtgtctgggtagcggattgcaaat-agcaggcacta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26558595|gb|CA830830.1|CA830830
EST:     TTGCAAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAAT                         AGCCCAAACTCCAACCAGAGCAACATGCTGATCCTCCAGGAGAGCTGCACG
genomic: TTGCAAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAATgcaagtgctc ... ccatgtacagAGCGCAAACTCCAACCAGAGCAACATGCTGATCCTCCAGGAGAGCTGCACG
EST: gi|87156118|gb|DY400907.1|DY400907
EST:     TTGCTAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAAT                         AGCCCAAGCTCCTACCAGAGCAACTTGCTGATCCTCCGGGAGAGCTGCTCG
genomic: TTGCAAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAATgcaagtgctc ... ccatgtacagAGCGCAAACTCCAACCAGAGCAACATGCTGATCCTCCAGGAGAGCTGCACG
EST: gi|22472184|gb|BU036664.1|BU036664
EST:     TTGCAAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAAT                         AGCCCAAACTCCAACCAGAGCAACATGCTGATCCTCCAGGAGAGCTGCACG
genomic: TTGCAAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAATgcaagtgctc ... ccatgtacagAGCGCAAACTCCAACCAGAGCAACATGCTGATCCTCCAGGAGAGCTGCACG
EST: gi|76017721|gb|DT944891.1|DT944891
EST:     TTGCAAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAAT                         AGCGCAAACTCCAACCAGAGCAACATGCTGATCCTCCAGGAGAGCTGCACG
genomic: TTGCAAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAATgcaagtgctc ... ccatgtacagAGCGCAAACTCCAACCAGAGCAACATGCTGATCCTCCAGGAGAGCTGCACG
EST: gi|5566756|gb|AI881622.1|AI881622
EST:     TTGCAAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAAT                         AGCCCAAACTCCAAC
genomic: TTGCAAACGGCCGGGACCATGGCAACTGCGTCTCCCTTCTTCGTGTCAATgcaagtgctc ... ccatgtacagAGCGCAAACTCCAAC