Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATATCATTATCTGTACTGTCAATAAACAAAATACACTGTGGCATCTTGCAGGAGCAGAGAAACAAAAGGAGGACAGGCAAAACTGAAGATGATAGGCGgtatggtattctgtattccgcatcctcattgttttagtcagcaatcagcatcatggtcatcttatctgaaagcatgcccatttggctcttttag

Basic information

species Zea mays
transcript GRMZM2G118014_T02
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83279326|gb|DV943334.1|DV943334
EST:     CAGGAGCAGAGAAACAAAAGGAGGACAGGCAAAACTGAAGATGATAGGCG                         ATCTAGAGAGCAGAGCAAGGATCGAAACGGCCCGCCGTCCAGGGATAGAGA
genomic: CAGGAGCAGAGAAACAAAAGGAGGACAGGCAAAACTGAAGATGATAGGCGgtatggtatt ... gctcttttagATCTAGAGAGCAGAGCAAGGATCGAAACGGCCCGCCGTCCAGGGATAGAGA
EST: gi|14243774|gb|BG841437.2|BG841437
EST:     CAGGAGCAGAGAAACAAAAGGAGGACAGGCAAAACTGAAGATGATAGGCG                         ATCTAGAGAGCAGAGCAAGGATCGAAACGGCCCGCCGTCCAGGGATAGAGA
genomic: CAGGAGCAGAGAAACAAAAGGAGGACAGGCAAAACTGAAGATGATAGGCGgtatggtatt ... gctcttttagATCTAGAGAGCAGAGCAAGGATCGAAACGGCCCGCCGTCCAGGGATAGAGA
EST: gi|211148420|gb|FL475620.1|FL475620
EST:     CAGGAGCAGAGAAACAAAAGGAGGACAGGCAAAACTGAAGATGATAGGCG                         ATCTAGAGAGCAGAGCAAGGATCGAAACGGCCCGCCGTCCAGGGATAGAGA
genomic: CAGGAGCAGAGAAACAAAAGGAGGACAGGCAAAACTGAAGATGATAGGCGgtatggtatt ... gctcttttagATCTAGAGAGCAGAGCAAGGATCGAAACGGCCCGCCGTCCAGGGATAGAGA
EST: gi|24767722|gb|CA402862.1|CA402862
EST:     CAGGAGCAGAGAAACAAAAGGAGGACAGGCAAAACTGAAGATGATAGGCG                         ATCTAGAGAGCAGAGCAAGGATCGAAACGGCCCGCCGTCCAGGGATAGAGA
genomic: CAGGAGCAGAGAAACAAAAGGAGGACAGGCAAAACTGAAGATGATAGGCGgtatggtatt ... gctcttttagATCTAGAGAGCAGAGCAAGGATCGAAACGGCCCGCCGTCCAGGGATAGAGA
EST: gi|60349927|gb|DN216900.1|DN216900
EST:     CAGGAGCAGAGAAACAAAAGGAGGACAGGCAAAACTGAAGATGATAGGCG                         ATCTAGAGAGCAGAGCAAGGATCGAAACGGCCCGCCGTCCAGGGATAGAGA
genomic: CAGGAGCAGAGAAACAAAAGGAGGACAGGCAAAACTGAAGATGATAGGCGgtatggtatt ... gctcttttagATCTAGAGAGCAGAGCAAGGATCGAAACGGCCCGCCGTCCAGGGATAGAGA
EST: gi|211168469|gb|FK981061.1|FK981061
EST:     GGCACAACTGAGGATGATAGGCG                         AACTAAAGAGCAGAGCAAGGATCGAAACGGCCCGCCGTCCAGGGATAGAGA
genomic: GGCAAAACTGAAGATGATAGGCGgtatggtatt ... gctcttttagATCTAGAGAGCAGAGCAAGGATCGAAACGGCCCGCCGTCCAGGGATAGAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAATATCATTATCTGTACTGTCAATAAACAAAATACACTGTGGCATCTTGCAGGAGCAGAGAAACAAAAGGAGGACAGGCAAAACTGAAGATGATAGGCGgtatggtattctgtattccgcatcctcattgttttagtcagcaatcagcatcatggtcatcttatctgaaagcatgcccatttggctcttttag

- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG