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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTAATCAGGCAGCAGTTCTCAAGTTGCACGGTTATAACCATAGCTCACAGGGTACCAACTGTGACAGACAGTGACAAGGTCATGGTCCTGTCCTACGgtatgttatacaagacatttttcgtcatgtagcatctgcagaaaagtccaattcattcctcggaatatcagtatgacagataaactatcaatgccttatatgatatattacaagtatatcaccaagcttactctatacgtgtatgtgtatatgtatgattcatgacgatgattttctaattgtgcag

Basic information

species Zea mays
transcript GRMZM2G113203_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113203_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os06g36650.1 (Oryza sativa), 5'ss of exon 11
AAAGTAATCAGGCAGCAGTTCTCAAGTTGCACGGTTATAACCATAGCTCACAGGGTACCAACTGTGACAGACAGTGACAAGGTCATGGTCCTGTCCTACGgtatgtta-taca-agacatttttcgtcatgtagcatctgcagaaaagtccaattcattcctcggaatatcagtatgacagataaactatcaatgccttatatgatatattacaagtatatcaccaagcttactctatacgtgtatgtgtatatgtatgattcatgacgatgatt-ttctaattgtgcag
|  || ||||||||||| |||||||||||||| ||  |||| || ||||||||||| |||||||| ||||||||||||||||||||||| || || || |||| |||| |||| | ||   | ||    || |  |||||  |||   ||   | || || |||    ||| | |           || | |  ||| | |     | | | ||  ||||| | |                  |     ||| || |||||||| |  ||||    ||||  ||||||||
AGGGTCATCAGGCAGCAATTCTCAAGTTGCACTGTGGTAACTATCGCTCACAGGGTTCCAACTGTAACAGACAGTGACAAGGTCATGGTACTTTCATATGgtaagttactacacacacgcatatcaatctg-aatatctgaggaaggttctggtccagtcatcgct-catccgaaccttc------ctctgatggccctgtcatccaaactgcacatatataaac------------------tgcacatatttggatgattcaagctgatggcccttctgtttgtgcag

upper sequence: GRMZM2G113203_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA08G20360.1 (Glycine max), 5'ss of exon 11
AAAGTAATCAGGCAGCAGTTCTCAAGTTGCACGGTTATAACCATAGCTCACAGGGTACCAACTGTGACAGACAGTGACAAGGTCATGGTCCTGTCCTACGgtat----gttatacaagacatttttcgtcatgtagcatctgcagaaaagtccaattcattcctcggaatatcagtatgacagataaactatcaatgccttatatgatatattacaagtatatcaccaagcttactctatacgtgtatgtgtatatgtatgattcatgacgatgattttctaattgtgcag
 |||| || || |   | ||  ||   ||||||||| ||||| | |||||||| || |||||||| | ||| || |||| |||||||||||||||||| |||||    ||||   |     | |||   | |  |  |  | |||| | ||     |  |  || |   | || |  |      |  | | |   ||  |  | |                                                                                      
CAAGTGATTAGACGAGAATTTGCAGAATGCACGGTTGTAACCGTGGCTCACAGAGTTCCAACTGTAATAGATAGCGACATGGTCATGGTCCTGTCCTATGgtatacaagttaattacattttctttttcctttcaaaaatttcagatacgtttggcttttctctagtcctctctgcttcctcattttatt-ttgctggttactgtag------------------------------------------------------------------------------------

upper sequence: GRMZM2G113203_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA08G20770.2 (Glycine max), 5'ss of exon 10
AAAGTAATCAGGCAGCAGTTCTCAAGTTGCACGGTTATAACCATAGCTCACAGGGTACCAACTGTGACAGACAGTGACAAGGTCATGGTCCTGTCCTACGgtatgttatacaagacatttttcgtcatgtagcatctgcagaaaagtccaattcattcctcggaatatcagtatgacagataaactatcaatgccttatatgatatattacaagtatatcaccaagcttactctatacgtgtatgtgtatatgtatgattcatgacgatgattttctaattgtgcag
 || |||| || ||  | ||   |   ||||||||||||||  | ||||||||||| |||||||| | ||| ||||||| |||||||||||| ||||| ||||||||   ||  || | ||   |||| |    ||  |     |  | | |||  | |||      ||| |  |  |  | |  | | || |                                                                                              
CAAATAATTAGACAAGAATTTGTAGAATGCACGGTTATAACTGTGGCTCACAGGGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTCTCCTATGgtatgtt---cattacttgttctttcattttttttccacctttta--ctacttctattctctagt--tcactcagttacctcattttttaaag----------------------------------------------------------------------------------------------

upper sequence: GRMZM2G113203_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA07G01380.1 (Glycine max), 5'ss of exon 7
AAAGTAATCAGGCAGCAGTTCTCAAGTTGCACGGTTATAACCATAGCTCACAGGGTACCAACTGTGACAGACAGTGACAAGGTCATGGTCCTGTCCTACGgtatgttatacaagacatttttcgtcatgtagcatctgcagaaaagtccaattcattcctcggaatatcagtatgacagataaactatcaatgccttatatgatatattacaagtatatcaccaagcttactctatacgtgtatgtgtatatgtatgattcatgacgatgattttctaattgtgcag
                              ||  |   ||  ||   |  |   | |     | |   | | ||  | |   |  | ||  |    | |  |   || | ||| | ||      | |   ||  ||  |||  | |     |             ||| | | || |  | | | |  |||    | |||     |   |     ||    ||   ||||   ||                                                    
------------------------------ACAATGCCAATTAT--TTTGCCTTGGAAGGTTTCTTCTAAAAAGGAATAGAATTTTAGTTGTAGATTCCATTG-ATTCTGCAACAGATGCCATTTTACAAAGGgtcctcaggcatgaattctctgaatgcacagttataaatgtggctcacagagttccaac-tgtaatagacagtgacatggtcatggt-cctgtcttatgtta----------------------------------------------------

upper sequence: GRMZM2G113203_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA07G01390.1 (Glycine max), 5'ss of exon 12
AAAGTAATCAGGCAGCAGTTCTCAAGTTGCACGGTTATAACCATAGCTCACAGGGTACCAACTGTGACAGACAGTGACAAGGTCATGGTCCTGTCCTACGgtatgttatacaagacatttttcgtcatgtagcatctgcagaaaagtccaattcattcctcggaatatcagtatgacagataaactatcaatgccttatatgatatattacaagtatatcaccaagcttactctatacgtgtatgtgtatatgtatgattcatgacgatgattttctaattgtgcag
 || |||| || ||  | ||  | |  ||||| ||||||||  | ||||||||||| |||||||| | ||| ||||||| |||||||||||| ||||| |||||||| | ||      ||||  || |      |    | || | | | ||||  |      ||| ||| | ||     | | || |   |  ||| | || || |                                                                                
CAAATAATTAGACAAGAATTTGCCAAATGCACAGTTATAACAGTGGCTCACAGGGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTCTCCTATGgtatgtttttca------tttttctcctcctttttagatataatacttctattctct------aat-tcactctg-----ttacctttttttttcttgt-tgctaaag-------------------------------------------------------------------------------

upper sequence: GRMZM2G113203_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA08G20780.1 (Glycine max), 5'ss of exon 12
AAAGTAATCAGGCAGCAGTTCTCAAGTTGCACGGTTATAACCATAGCTCACAGGGTACCAACTGTGACAGACAGTGACAAGGTCATGGTCCTGTCCTACGgtatgttatacaagacatttttcgtcatgtagcatctgca----gaaaagtccaattcattcctcggaatatcagtatgacagataaactatcaatgccttatatgatatattacaagtatatcaccaagcttactctatacgtgtatgtgtatatgtatgattcatgacgatgattttctaattgtgcag
 |||| ||||| ||  | || |||   ||||| ||||||||  | |||||||| || |||||||| | ||||||||||| |||||||||||| ||||| |||||||| |       |||  | | ||    |   ||  |    |||    || || |||      || | | | |   |  ||   |     ||||  |                                                                                           
CAAGTCATCAGACAAGAATTTTCAGAATGCACAGTTATAACGGTGGCTCACAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTCCTATCCTATGgtatgttgttattattattaataggcactccgtgcctagacttggaagttacctatacatgtggttgagtgtaacttgtattgaatgatgcaaaatgttt-------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101387128|gb|EB815581.1|EB815581
EST:     CAGGGTACCAACTGTGACAGACAGTGACAAGGTCATGGTCCTGTCCTACG                         GGAAGCTTTTAGAATATGAAACACCAGCCAAGCTGTTGGAAGACAAACAAT
genomic: CAGGGTACCAACTGTGACAGACAGTGACAAGGTCATGGTCCTGTCCTACGgtatgttata ... aattgtgcagGGAAGCTTCTAGAATATGAAACACCAGCCAAGCTGTTGGAAGACAAACAAT
EST: gi|6828140|gb|AW331783.1|AW331783
EST:     CAGGGTACCAACTGTGACAGACAGTGACAAGGTCATGGTCCTGTCCTACG                         GGAAGCTTCTAGAATATGAAACACCAGCCAAGCTGTTGGAAGACAAACAAT
genomic: CAGGGTACCAACTGTGACAGACAGTGACAAGGTCATGGTCCTGTCCTACGgtatgttata ... aattgtgcagGGAAGCTTCTAGAATATGAAACACCAGCCAAGCTGTTGGAAGACAAACAAT
EST: gi|78021398|gb|DV489785.1|DV489785
EST:     ACAGACAGTGACAAGGTCATGGTCCTGTCCTACG                         GGAAGCTTCTAGAATATGAAACACCAGCCAAGCTGTTGGAAGACAAACAAT
genomic: ACAGACAGTGACAAGGTCATGGTCCTGTCCTACGgtatgttata ... aattgtgcagGGAAGCTTCTAGAATATGAAACACCAGCCAAGCTGTTGGAAGACAAACAAT
EST: gi|37391070|gb|CF632775.1|CF632775
EST:     CAGGGTACCAACTGTGACAGACAGTGACAAGGTCATGGTCCTGTCCTACG                         GGAAGCTTCTAGAATATGAAACACCAGCCAAGCTGTTGGAAGACAAACAAT
genomic: CAGGGTACCAACTGTGACAGACAGTGACAAGGTCATGGTCCTGTCCTACGgtatgttata ... aattgtgcagGGAAGCTTCTAGAATATGAAACACCAGCCAAGCTGTTGGAAGACAAACAAT
EST: gi|32933219|gb|CF038031.1|CF038031
EST:     TACCAACTGTGACAGACAGTGACAAGGTCATGGTCCTGTCCTACG                         GGAAGCTTCTAGAATATGAAACACCAGCCAAGCTGTTGGAAGACAAACAAT
genomic: TACCAACTGTGACAGACAGTGACAAGGTCATGGTCCTGTCCTACGgtatgttata ... aattgtgcagGGAAGCTTCTAGAATATGAAACACCAGCCAAGCTGTTGGAAGACAAACAAT
EST: gi|5917346|gb|AW054137.1|AW054137
EST:     TGTG-CAGACAGTGACAAGGTCATGGTCCTGTCCTACG                         GGAAGCTTCTAGAATATGAAACACCAGCCAAGCTGTTGGAAGACAAACAAT
genomic: TGTGACAGACAGTGACAAGGTCATGGTCCTGTCCTACGgtatgttata ... aattgtgcagGGAAGCTTCTAGAATATGAAACACCAGCCAAGCTGTTGGAAGACAAACAAT