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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAGgtttcgttctctcagacttcttgtgtgatttaatgcagttcatatatacatatgtttgtttgtgtttgaattattggcttgatgcagaatatgattcact...

Basic information

species Zea mays
transcript GRMZM2G111713_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G111713_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os07g45300.1 (Oryza sativa), 5'ss of exon 11
ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAGgtttcgttctctcagacttctt-gtgtgatt--taatgcagttca-tatatacatatgtttgtttgtgtttgaattattggcttgatgcagaatatgattcact
||||| |||||||| |||||||| || |||||||| ||||||||||| ||||| || || || ||||||||  ||| || |||  |      || |   |  |  ||   |||| | |      |    | | | ||||||  | ||| |     ||     |||| ||    
ATTGGACTCGATAAAAATGACCTTGACAAAGCTTTCATACAGCTTACGCTTGAATTCGTCACTAAACAGgtcccgtactttcattccctaaagtttagctgtttgtgtgattcaatgtggtgccactactttctttgtttgtgtcatttgtcct-tgacttttatggttt---

upper sequence: GRMZM2G111713_T02 (Zea mays), 5'ss of exon 9
lower sequence: Vv14s0030g00010.t01 (Vitis vinifera), 5'ss of exon 6
ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAGgtttcgttctctcagacttcttgtgtgatttaatgcagttcatatatacatatgtttgtttgtgtttgaattattggcttgatgcagaatatgattcact--
||     | |||   |||||| || |||||||||| ||||||||||| ||||||||| | || || ||||| |   | ||      |  || | |  |  | |     ||| | ||    || ||| | ||  |    ||   |   ||     | | || | || |    
ATATCAATTGATCGAAATGACATGAATAAAGCTTTCATACAGCTTACGCTTGAGTTTCTGACTAAGCAGgtattaatttcc--acttggttttatcctacattttctatcaaaaatgatgatttttttatgaatcatgatcggtatattctgttacattacgcttaatcac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88758132|gb|DY542273.1|DY542273
EST:     ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAG                         AAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
genomic: ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAGgtttcgttct ... ttttctgtagAAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
EST: gi|32845899|gb|CD985580.1|CD985580
EST:     ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAG                         AAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
genomic: ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAGgtttcgttct ... ttttctgtagAAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
EST: gi|76923556|gb|DV169545.1|DV169545
EST:     ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAG                         AAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
genomic: ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAGgtttcgttct ... ttttctgtagAAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
EST: gi|4827723|gb|AI668415.1|AI668415
EST:     ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAG                         AAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
genomic: ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAGgtttcgttct ... ttttctgtagAAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
EST: gi|60340408|gb|DN207381.1|DN207381
EST:     ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAG                         AAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
genomic: ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAGgtttcgttct ... ttttctgtagAAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
EST: gi|50337822|gb|CO532948.1|CO532948
EST:     ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAG                         AAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
genomic: ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAGgtttcgttct ... ttttctgtagAAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
EST: gi|89251080|gb|DY622866.1|DY622866
EST:     ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAG                         AAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
genomic: ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAGgtttcgttct ... ttttctgtagAAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
EST: gi|37383724|gb|CF628889.1|CF628889
EST:     ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAG                         AAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
genomic: ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAGgtttcgttct ... ttttctgtagAAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
EST: gi|148938687|gb|EC883023.2|EC883023
EST:     ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAG                         AAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
genomic: ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAGgtttcgttct ... ttttctgtagAAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
EST: gi|18181535|gb|BM382745.1|BM382745
EST:     ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAG                         AAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
genomic: ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAGgtttcgttct ... ttttctgtagAAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
EST: gi|89248722|gb|DY620508.1|DY620508
EST:     ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAG                         AAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
genomic: ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAGgtttcgttct ... ttttctgtagAAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
EST: gi|71420007|gb|DR804974.1|DR804974
EST:     ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAG                         AAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
genomic: ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAGgtttcgttct ... ttttctgtagAAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
EST: gi|211237149|gb|FL440871.1|FL440871
EST:     ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAG                         AAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG
genomic: ACCTGGATAAAGCTTTTATACAGCTTACACTTGAGTTTGTTACCAAACAGgtttcgttct ... ttttctgtagAAATTTGAAGCCTATAATTCAAAGGGTGCAGTTGTGTCTGGAGACAAGTCG