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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTGGACTGGAATGAGAACTGTGCGGTACTTCGATGGGAGGACATACGAATGGGTTGGTTTGAGCCGCCAACCCAACATTATCAGTAAGgtgcgttcattggatgtgtagtcaaatgagctgtactgcagagcatgcagttgagctggatctatttcccagttttggtggatgttcctctttgagggaa...

Basic information

species Zea mays
transcript GRMZM2G110834_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 9
GTATTTGGACTGGAATGAGAACTGTGCGGTACTTCGATGGGAGGACATACGAATGGGTTGGTTTGAGCCGCCAACCCAACATTATCAGTAAGgtgcgttcattggatgtgtagtcaaatga-gctgtactgcagagcatgcagttgagctggatctatttcccagttttggtggatgttcctctttgagggaa-
|||||||| |||||||||  |||||| | ||||| |||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||  | ||||| |||||  ||   ||||| | ||  | ||| |||||   || |   |  |  | | |     ||||||    ||| ||  ||| | | |  
GTATTTGGGCTGGAATGAAGACTGTGAGATACTTTGATGGGAGGACATATGAATGGGTTGGTTTGAGTCGTCAACCCAATATTATCAGTAAGgtatgctcattagatgtcaaggggaatgaagttgcccagcaaagcatatggtggcattatacttttctttt--ttttggcatctgtcccatttttatgcagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60397677|gb|DN230493.1|DN230493
EST:     GGACATACGAATGGGTTGGTTTGAGCCGCCAACCCAACATTATCAGTAAG                         GTAAAAAGGATGCTGGGACAGTTCACACCAGCGCAGTGGGACAAGGATGAG
genomic: GGACATACGAATGGGTTGGTTTGAGCCGCCAACCCAACATTATCAGTAAGgtgcgttcat ... ttctccttagGTAAAAAGGATGCTGGGACAGTTCACACCAGCGCAGTGGGACAAGGATGAG
EST: gi|91869156|gb|EB400279.1|EB400279
EST:     GGACATACGAATGGGTTGGTTTGAGCCGCCAACCCAACATTATCAGTAAG                         GTAAAAAGGATGCTGGGACAGTTCACACCAGCGCAGTGGGACAAGGATGAG
genomic: GGACATACGAATGGGTTGGTTTGAGCCGCCAACCCAACATTATCAGTAAGgtgcgttcat ... ttctccttagGTAAAAAGGATGCTGGGACAGTTCACACCAGCGCAGTGGGACAAGGATGAG
EST: gi|74231927|gb|DT639841.1|DT639841
EST:     GGACATACGAATGGGTTGGTTTGAGCCGCCAACCCAACATTATCAGTAAG                         GTAAAAAGGATGCTGGGACAGTTCACACCAGCGCAGTGGGACAAGGATGAG
genomic: GGACATACGAATGGGTTGGTTTGAGCCGCCAACCCAACATTATCAGTAAGgtgcgttcat ... ttctccttagGTAAAAAGGATGCTGGGACAGTTCACACCAGCGCAGTGGGACAAGGATGAG
EST: gi|71318559|gb|DR796040.1|DR796040
EST:     GGACATACGAATGGGTTGGTTTGAGCCGCCAACCCAACATTATCAGTAAG                         GTAAAAAGGATGCTGGGACAGTTCACACCAGCGCAGTGGGACAAGGATGAG
genomic: GGACATACGAATGGGTTGGTTTGAGCCGCCAACCCAACATTATCAGTAAGgtgcgttcat ... ttctccttagGTAAAAAGGATGCTGGGACAGTTCACACCAGCGCAGTGGGACAAGGATGAG