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CAACATTAGCCCGGAAGGTTTACATCCTGTAGCCGAGTTCCTCAAAAGGACAAAGTCCTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAGgtaatactgttgcttcaattattttctgcttgcgtggtggtaccgactaaaatattggattgtctacatatgaacgtaccatcagatctagaacaaatta...
species | Zea mays |
transcript | GRMZM2G110289_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAAGTCCTTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAG GGAGCTGAAAAGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACCEST: gi|60354010|gb|DN220983.1|DN220983
genomic: AAAGTCC-TTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAGgtaatactgt ... atttcaccagGGAGCTGAAAAGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACC
EST: CAAAGTCCTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAG GGAGCTGAAAAGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACCEST: gi|32840315|gb|CD979996.1|CD979996
genomic: CAAAGTCCTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAGgtaatactgt ... atttcaccagGGAGCTGAAAAGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACC
EST: CAAAGTCCTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAG GGAGCTGAAAAGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACCEST: gi|18384842|gb|BM418041.1|BM418041
genomic: CAAAGTCCTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAGgtaatactgt ... atttcaccagGGAGCTGAAAAGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACC
EST: CAAAGTCCTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAG GGAGCTGGAAAGGTTGCTGAGGCTCTGAAAGATAACAAAEST: gi|67010636|gb|CO439385.1|CO439385
genomic: CAAAGTCCTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAGgtaatactgt ... atttcaccagGGAGCTGAAAAGGTTGCTGAGGCTCTGAAAGATAACAAA
EST: CAAAGTCCTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAG GGAGCTGAAAAGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACCEST: gi|18384843|gb|BM418042.1|BM418042
genomic: CAAAGTCCTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAGgtaatactgt ... atttcaccagGGAGCTGAAAAGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACC
EST: CAAAGTCCTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAG GGAGCTGGAAAGGTTGCTGAGGCTCTGAAAGATAACAAAACAEST: gi|16746087|gb|BM032517.1|BM032517
genomic: CAAAGTCCTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAGgtaatactgt ... atttcaccagGGAGCTGAAAAGGTTGCTGAGGCTCTGAAAGATAACAAAACA
EST: CAA-GTCCTT-CAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAG GGAGCTGGAAAGGTTGCTGAGGCTCTGAAAGEST: gi|60346680|gb|DN213653.1|DN213653
genomic: CAAAGTCCTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAGgtaatactgt ... atttcaccagGGAGCTGAAAAGGTTGCTGAGGCTCTGAAAG
EST: CAAAGTCCTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAG GGAGCTGAAAAGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACCEST: gi|12046108|gb|BF728247.1|BF728247
genomic: CAAAGTCCTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAGgtaatactgt ... atttcaccagGGAGCTGAAAAGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACC
EST: CAAAGTCCTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAG GGAGCTGGAAAGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACCEST: gi|18384685|gb|BM417884.1|BM417884
genomic: CAAAGTCCTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAGgtaatactgt ... atttcaccagGGAGCTGAAAAGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACC
EST: CAAAGTCCTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAG GGAGCTGGAAAGGTTGCTGAGGCTCTGAAAGATAACAAAACAEST: gi|18384683|gb|BM417882.1|BM417882
genomic: CAAAGTCCTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAGgtaatactgt ... atttcaccagGGAGCTGAAAAGGTTGCTGAGGCTCTGAAAGATAACAAAACA
EST: CAAAGTCCTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAG GGAGCTGGAAAGGTTGCTGAGGCTCTGAAAGAT
genomic: CAAAGTCCTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAGgtaatactgt ... atttcaccagGGAGCTGAAAAGGTTGCTGAGGCTCTGAAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACATTAGCCCGGAAGGTTTACATCCTGTAGCCGAGTTCCTCAAAAGGACAAAGTCCTTACAGTGGTTCAGTCTCTACATGAACGATATTAGTGATGAGgtaatactgttgcttcaattattttctgcttgcgtggtggtaccgactaaaatattggattgtctacatatgaacgtaccatcagatctagaacaaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaacaaa