Sequence
atgc intronic sequence ATGC exonic sequenceACTGGGAGGAAACCAAGTGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATTgtaagtcaagatgcacatgagagatctcgaacttattcaacggcctattatgtatattcttctttgtcaacctacaaccttttgttttatgttttagtgatggcatcaactatgttttacgtttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G109651_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA19G29580.2 (Glycine max), 5'ss of exon 5
ACTGGGAGGAAACCAAGTGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATTgtaagtcaagatgcacatgagagatctcgaacttattcaacggcctattat-gtatattcttctttgtcaacctacaaccttttgttttatgttttagtgatggcatcaactatgttttacgtttgcag
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ACAGGGAGGAAACCTAGCGGATTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATTgtaagttatgctaaagttttccatctttttattgattttattattgcttgtagggtattttctataacctatatagggcctcatagttgttga--agataat---------------------------
upper sequence: GRMZM2G109651_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA16G03970.1 (Glycine max), 5'ss of exon 10
ACTGGGAGGAAACCAAGTGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATTgtaagtcaagatgcacatgagagatctcgaacttattcaacggcctattat-gtatattcttctttgtcaacctacaaccttttgttttatgttttagtgatggcatcaactatgttttacgtttgcag
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ACAGGGAGGAAACCTAGCGGACTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATTgtaagttatgctaaagttttgcatcttttgattgattttattattgcttgtagtgtattttctataacctatacagggcctcataattgttga--agataat---------------------------
upper sequence: GRMZM2G109651_T01 (Zea mays), 5'ss of exon 9
lower sequence: AT2G01280.1 (Arabidopsis thaliana), 5'ss of exon 9
ACTGGGAGGAAACCAAGTGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATTgtaagtcaagatgcacatgagagatctcgaacttattcaacggcctattatgtatattcttctttgtcaacctacaaccttttgttttatgttttagtgatggcatcaactatgttttacgtttgcag
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ACAGGCCGGAAACCAAGTGGAATATGTGGAGCAGCAATTTACATGGCTGCACTTTCTCATGGTATCATGTACTCTAGGGCAGACATTgtaag----aatctgattcaagcttctttaaagaatct--tgttataagatgagagcaaagatgtttcgatttgatgtgtttttctatataactttcag-----------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|93284105|gb|EB676369.1|EB676369EST: TATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATT GTCTCTGTTGTGCATGTGTGTGAGGCCACTCTAACGAAGCGATTGATAGAG
genomic: TATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATTgtaagtcaag ... acgtttgcagGTCTCTGTTGTGCATGTGTGTGAGGCCACTCTAACGAAGCGATTGATAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTGGGAGGAAACCAAGTGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATTgtaagtcaagatgcacatgagagatctcgaacttattcaacggcctattatgtatattcttctttgtcaacctacaaccttttgttttatgttttagtgatggcatcaactatgttttacgtttgcag
- - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT