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GGGAGGCAGAACAACAGACAAGAAAAAGAGCAAGCTTATAGGTGTCGAGGATGGACCTAAAGACATTCGCATTGAAAGAATAGATGAATTTGGCAGAGTGgtaagtactcagctacgtcctgtgcaacccactcctacctgggtctccatgaggcataggcactaccgagattaattactgaattgattttaatgttttt...
species | Zea mays |
transcript | GRMZM2G109284_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATTGAAAGAATAGATGAATTTGGCAGAGTG ATGACACCTAAGGAGGCATTCCGTCATCTTTCGCACAAGTTTCATGGCAAGEST: gi|67015766|gb|CO444515.1|CO444515
genomic: ATTGAAAGAATAGATGAATTTGGCAGAGTGgtaagtactc ... ttcctctcagATGACACCTAAGGAGGCATTCCGTCATCTTTCGCACAAGTTTCATGGCAAG
EST: ATGGACCTAAAGACATTCGCATTGAAAGAATAGATGAATTTGGCAGAGTG ATGACACCTAAGGAGGCATTCCGTCATCTTTCGCACAAGTTTCATGGCAAGEST: gi|40303475|gb|CK347862.1|CK347862
genomic: ATGGACCTAAAGACATTCGCATTGAAAGAATAGATGAATTTGGCAGAGTGgtaagtactc ... ttcctctcagATGACACCTAAGGAGGCATTCCGTCATCTTTCGCACAAGTTTCATGGCAAG
EST: ATGGACCTAAAGACATTCGCATTGAAAGAATAGATGAATTTGGCAGAGTG ATGACACCTAAGGAGGCATTCCGTCATCTTTCGCACAAGTTTCATGGCAAGEST: gi|78104253|gb|DV522671.1|DV522671
genomic: ATGGACCTAAAGACATTCGCATTGAAAGAATAGATGAATTTGGCAGAGTGgtaagtactc ... ttcctctcagATGACACCTAAGGAGGCATTCCGTCATCTTTCGCACAAGTTTCATGGCAAG
EST: ATGGACCTAAAGACATTCGCATTGAAAGAATAGATGAATTTGGCAGAGTG ATGACACCTAAGGAGGCATTCCGTCATCTTTCGCACAAGTTTCATGGCAAGEST: gi|5928805|gb|AW056097.1|AW056097
genomic: ATGGACCTAAAGACATTCGCATTGAAAGAATAGATGAATTTGGCAGAGTGgtaagtactc ... ttcctctcagATGACACCTAAGGAGGCATTCCGTCATCTTTCGCACAAGTTTCATGGCAAG
EST: ATGGACCTAAAGACATTCGCATTGAAAGAATAGATGAATTTGGCAGAGTG ATGACACCTAAGGAGGCATTCCGTCATCTTTCGCACAAGTTTCATGGCAAG
genomic: ATGGACCTAAAGACATTCGCATTGAAAGAATAGATGAATTTGGCAGAGTGgtaagtactc ... ttcctctcagATGACACCTAAGGAGGCATTCCGTCATCTTTCGCACAAGTTTCATGGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAGGCAGAACAACAGACAAGAAAAAGAGCAAGCTTATAGGTGTCGAGGATGGACCTAAAGACATTCGCATTGAAAGAATAGATGAATTTGGCAGAGTGgtaagtactcagctacgtcctgtgcaacccactcctacctgggtctccatgaggcataggcactaccgagattaattactgaattgattttaatgttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccactcc