1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGAATATGAAGAGAAAAAAGAGATGGTGGCCAACGAGATTATAAGAAGGCTTGAAAAGAAGTTGTTTCCTGGTCTTCAAGATTCAATAGTCCTCAAAGAGgtactttcctgttttcaattttattctattgttacgttttccacagtttgatttttatcaattctttataaactttaaagtgccttctagcaactgttaa...
species | Zea mays |
transcript | GRMZM2G108457_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGAAAAAGAAGTTGTTTCCTGGTCTTCAAGATTCAATAGTCCTCAAAGAG GTAGGCTCACCAAAGACTCACCGGAGATTTCTTGCTCGAAATGATGGTACAEST: gi|71431774|gb|DR812824.1|DR812824
genomic: TG-AAAAGAAGTTGTTTCCTGGTCTTCAAGATTCAATAGTCCTCAAAGAGgtactttcct ... gtttcatcagGTAGGCTCACCAAAGACTCACCGGAGATTTCTTGCTCGAAATGATGGTACA
EST: TTGAAAAGAAGTTGTTTCCTGGTCTTCAAGATTCAATAGTCCTCAAAGAG GTAGGCTCACCAAAGACTCACCGGAGATTTCTTGCTCGAAATGATGGTACAEST: gi|60336973|gb|DN203946.1|DN203946
genomic: TTGAAAAGAAGTTGTTTCCTGGTCTTCAAGATTCAATAGTCCTCAAAGAGgtactttcct ... gtttcatcagGTAGGCTCACCAAAGACTCACCGGAGATTTCTTGCTCGAAATGATGGTACA
EST: TTGAAAAGAAGTTGTTTCCTGGTCTTCAAGATTCAATAGTCCTCAAAGAG GTAGGCTCACCAAAGACTCACCGGAGATTTCTTGCTCGAAATGATGGTACAEST: gi|86471657|gb|DY238027.1|DY238027
genomic: TTGAAAAGAAGTTGTTTCCTGGTCTTCAAGATTCAATAGTCCTCAAAGAGgtactttcct ... gtttcatcagGTAGGCTCACCAAAGACTCACCGGAGATTTCTTGCTCGAAATGATGGTACA
EST: TTGAAAAGAAGTTGTTTCCTGGTCTTCAAGATTCAATAGTCCTCAAAGAG GTAGGCTCACCAAAGACTCACCGGAGATTTCTTGCTCGAAATGATGGTACA
genomic: TTGAAAAGAAGTTGTTTCCTGGTCTTCAAGATTCAATAGTCCTCAAAGAGgtactttcct ... gtttcatcagGTAGGCTCACCAAAGACTCACCGGAGATTTCTTGCTCGAAATGATGGTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAATATGAAGAGAAAAAAGAGATGGTGGCCAACGAGATTATAAGAAGGCTTGAAAAGAAGTTGTTTCCTGGTCTTCAAGATTCAATAGTCCTCAAAGAGgtactttcctgttttcaattttattctattgttacgttttccacagtttgatttttatcaattctttataaactttaaagtgccttctagcaactgttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT