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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCAGTTGTATGCTGAACAAGTTTCTCAGCTTATGACTACTGAGAAGAACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcacttctaagaccatttctaggttccaaatggttgccctgtagatgacgacaataacgacaacatttggctttggtccaaatcaagttgatgt...

Basic information

species Zea mays
transcript GRMZM2G107731_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107731_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g17930.1 (Oryza sativa), 5'ss of exon 8
AATGCAGTTGTATGCTGAACAAGTTTCTCAGCTTATGACTACTGAGAAGAACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcacttctaagaccatttc------------taggttccaaatggttgccctgtagatgacgacaataacgacaacatttggct--ttggtccaaatcaa--gttgatgt-----------------------------------------------
 |||||| | |||||||| ||||||||||| |||||| |||| ||||||||  |  ||||||| |||||| |||| || |||||||||||||| |||||||||| ||  ||  | || || |||             ||  | ||  ||||| |   |     ||  ||     | |  || |||       ||  |||   | ||  || |||                                                 
GATGCAGCTATATGCTGATCAAGTTTCTCAACTTATGTCTACCGAGAAGAATTTAAGGTTGCAGCTAGCTGCTGATGGAGAAAGATTTCAGCAGTTTCAGgtacctttgctgattaggcccttttcgtaatgacgagtatatgcctcatggtggttttccctttgcagatggctatgcaaatattcaagcagtttctccgttttaattgtggatagctctgccttgtactaaaattttaaaattgtctactttaccttatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148994669|gb|EE034190.2|EE034190
EST:     ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAG                         GATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
genomic: ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
EST: gi|149071350|gb|EE159745.2|EE159745
EST:     CAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAG                         GATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
genomic: CAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
EST: gi|71758247|gb|DR956184.1|DR956184
EST:     ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAG                         GATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
genomic: ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
EST: gi|78022706|gb|DV491093.1|DV491093
EST:     CGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAG                         GATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
genomic: CGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
EST: gi|37394977|gb|CF634768.1|CF634768
EST:     ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAG                         GATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
genomic: ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
EST: gi|213169996|gb|FM189145.1|FM189145
EST:     ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAG                         GATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
genomic: ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
EST: gi|71774541|gb|DR972419.1|DR972419
EST:     ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAG                         GATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
genomic: ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
EST: gi|32931571|gb|CF036383.1|CF036383
EST:     ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAG                         GATGCCTTGTCAAAAAGCAATGAAGTCCTTGAAACCTACAAGCAGGAGATG
genomic: ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
EST: gi|78114092|gb|DV532481.1|DV532481
EST:     GGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAG                         GATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
genomic: GGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
EST: gi|60337106|gb|DN204079.1|DN204079
EST:     GACGGTGAAAGATTTCAGCACTTTCAG                         GATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
genomic: GACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACAAGCAGGAGATG
EST: gi|60358220|gb|DN225193.1|DN225193
EST:     ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAG                         GATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACA
genomic: ACCTGCGGTTGCAACTAGCTTCTGACGGGGAAAGATTTCAGCACTTTCAGgtactttcac ... cctttatcagGATGCCTTGTCAAAAAGCAATGAAGTCTTTGAAACTTACA