Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTTCCGAGGAAATTGATTGATTTTCTTGATGCCCCTGTACCTTTCATTgtaagttttttgggttcttgaagcccatttattttgttgttattattgagttaatttacactgaccgtagaccataattgctaaattttagcaatttgtatttattattaagtctcagtaatagctgaagtgtaaacagtaatccagtttattttatag

Basic information

species Zea mays
transcript GRMZM2G107651_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107651_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g05200.2 (Oryza sativa), 5'ss of exon 13
ATTCTTCCGAGGAAATTGATTGATTTTCTTGATGCCCCTGTACCTTTCATTgtaagttttttgggttcttg-aagcccatttattttgttgttattattgagttaatttacactgaccgtagaccataattgctaaattttagcaatttgtatttattattaagtctcagtaatagctgaagtgtaaacagtaatccagtt-tattttatag
 |||| || || |||||| | |||||||||||||| || || |||||||||||||||| |    ||||||  |||| || |||||  ||  |  |  || |   | |   ||||||||| |      ||||  |  || ||| | || |       | |  | ||     |  |   || |   ||     |   |  ||| | |  || ||
GTTCTACCAAGAAAATTGGTGGATTTTCTTGATGCTCCCGTCCCTTTCATTgtaagttctgaatgttcttttaagcacacttattg-gtcatgctctttcaaggagtcatcactgaccgcaattgccaatttgtgcatgttaccgatct-------tcaccatgttctgattgtttgtgcatattagctgatggacgtgttctctcctacag

upper sequence: GRMZM2G107651_T02 (Zea mays), 5'ss of exon 10
lower sequence: Vv07s0005g04510.t01 (Vitis vinifera), 5'ss of exon 12
ATTCTTCCGAGGAAATTGATTGATTTTCTTGATGCCCCTGTACCTTTCATTgtaagttttttgggttcttgaagcccatttattttgttgttattattgagttaatttacactgaccgtagaccataattgctaaattttagcaatttgtatttattattaagtctcagtaatagctgaagtgtaaacagtaatccagtttattttatag
 || | ||||||||  || | |||||||||||||||||||| ||||||||||| |||   |    |||||       |||| | || |  |||  ||||  |  | |   | | |  ||  ||  |  |   |  || |   ||||      || ||                                                     
GTTTTACCGAGGAAGATGTTCGATTTTCTTGATGCCCCTGTTCCTTTCATTgtgagtggatcattttctttgt-tttatttgtgtt-taatta--attgcatgtaatggta-tcattgtgaact-tgttcttttcatatacacaatgcaccattctt-----------------------------------------------------